Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2697.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,607,407	+				+1.5
2,607,407	+				+0.8
2,607,407	+				-0.4
2,607,408	-				+1.4
2,607,408	-				+0.5
2,607,408	-				-2.1
2,607,494	-		Xcc-8004.2696.1	0.18	-1.0
2,607,494	-		Xcc-8004.2696.1	0.18	-0.5
2,607,637	+		Xcc-8004.2696.1	0.33	-1.0
2,607,637	+		Xcc-8004.2696.1	0.33	-1.3
2,607,637	+		Xcc-8004.2696.1	0.33	-2.5
2,607,637	+		Xcc-8004.2696.1	0.33	-1.6
2,607,637	+		Xcc-8004.2696.1	0.33	-2.1
2,607,638	-		Xcc-8004.2696.1	0.33	+0.8
2,607,638	-		Xcc-8004.2696.1	0.33	-1.3
2,607,638	-		Xcc-8004.2696.1	0.33	-0.0
2,607,638	-		Xcc-8004.2696.1	0.33	-1.5
2,607,638	-		Xcc-8004.2696.1	0.33	+1.0
2,607,638	-		Xcc-8004.2696.1	0.33	-1.5
2,607,638	-		Xcc-8004.2696.1	0.33	-3.4
2,607,759	-		Xcc-8004.2696.1	0.47	-0.5
2,607,875	-		Xcc-8004.2696.1	0.59	-0.4
2,607,875	-		Xcc-8004.2696.1	0.59	-0.3
2,607,875	-		Xcc-8004.2696.1	0.59	+0.8
2,607,875	-		Xcc-8004.2696.1	0.59	-0.8
2,607,875	-		Xcc-8004.2696.1	0.59	+1.2
2,607,875	-		Xcc-8004.2696.1	0.59	-1.0
2,607,875	-		Xcc-8004.2696.1	0.59	+0.3
2,607,875	-		Xcc-8004.2696.1	0.59	+0.0
2,607,925	+		Xcc-8004.2696.1	0.65	-1.1
2,607,925	+		Xcc-8004.2696.1	0.65	-0.8
2,607,925	+		Xcc-8004.2696.1	0.65	+1.1
2,607,925	+		Xcc-8004.2696.1	0.65	-0.8
2,607,925	+		Xcc-8004.2696.1	0.65	-1.5
2,607,925	+		Xcc-8004.2696.1	0.65	-1.2
2,607,925	+		Xcc-8004.2696.1	0.65	+1.5
2,607,925	+		Xcc-8004.2696.1	0.65	-0.9
2,607,925	+		Xcc-8004.2696.1	0.65	-1.1
2,607,925	+		Xcc-8004.2696.1	0.65	-0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.0
2,607,925	+		Xcc-8004.2696.1	0.65	-1.5
2,607,926	-		Xcc-8004.2696.1	0.65	+0.5
2,607,926	-		Xcc-8004.2696.1	0.65	-0.8
2,607,926	-		Xcc-8004.2696.1	0.65	-0.3
2,607,967	-		Xcc-8004.2696.1	0.69	-0.2
2,607,982	+		Xcc-8004.2696.1	0.71	-0.4
2,607,982	+		Xcc-8004.2696.1	0.71	-1.0
2,607,982	+		Xcc-8004.2696.1	0.71	+0.4
2,607,982	+		Xcc-8004.2696.1	0.71	-0.7
2,607,982	+		Xcc-8004.2696.1	0.71	+0.5
2,607,983	-		Xcc-8004.2696.1	0.71	+0.8
2,607,983	-		Xcc-8004.2696.1	0.71	+0.7
2,607,983	-		Xcc-8004.2696.1	0.71	-1.0
2,608,041	-		Xcc-8004.2696.1	0.77	-0.3
2,608,060	+		Xcc-8004.2696.1	0.79	-0.9
2,608,060	+		Xcc-8004.2696.1	0.79	+1.0
2,608,060	+		Xcc-8004.2696.1	0.79	-0.6
2,608,060	+		Xcc-8004.2696.1	0.79	+0.1
2,608,060	+		Xcc-8004.2696.1	0.79	-0.9
2,608,060	+		Xcc-8004.2696.1	0.79	-1.6
2,608,060	+		Xcc-8004.2696.1	0.79	-0.7
2,608,060	+		Xcc-8004.2696.1	0.79	-0.4
2,608,060	+		Xcc-8004.2696.1	0.79	-0.9
2,608,060	+		Xcc-8004.2696.1	0.79	-1.0
2,608,061	-		Xcc-8004.2696.1	0.79	+0.2
2,608,061	-		Xcc-8004.2696.1	0.79	+1.2
2,608,061	-		Xcc-8004.2696.1	0.79	+1.5
2,608,090	+		Xcc-8004.2696.1	0.83	+0.4
2,608,090	+		Xcc-8004.2696.1	0.83	+0.9
2,608,090	+		Xcc-8004.2696.1	0.83	-0.6
2,608,091	-		Xcc-8004.2696.1	0.83	-1.3
2,608,091	-		Xcc-8004.2696.1	0.83	+0.5
2,608,150	+		Xcc-8004.2696.1	0.89	+0.3
2,608,150	+		Xcc-8004.2696.1	0.89	-1.2
2,608,150	+		Xcc-8004.2696.1	0.89	+0.0
2,608,150	+		Xcc-8004.2696.1	0.89	-1.2
2,608,150	+		Xcc-8004.2696.1	0.89	-1.2
2,608,150	+		Xcc-8004.2696.1	0.89	-1.0
2,608,151	-		Xcc-8004.2696.1	0.89	-1.0
2,608,151	-		Xcc-8004.2696.1	0.89	-0.9
2,608,151	-		Xcc-8004.2696.1	0.89	+0.9
2,608,151	-		Xcc-8004.2696.1	0.89	-0.6
2,608,151	-		Xcc-8004.2696.1	0.89	-0.2
2,608,283	+				-0.7
2,608,283	+				+1.1
2,608,283	+				-1.1
2,608,284	-				-1.3
2,608,284	-				+0.0
2,608,284	-				-1.0
2,608,330	+				+0.7
2,608,330	+				-0.5
2,608,330	+				-0.8
2,608,330	+				+2.3
2,608,330	+				-0.7
2,608,331	-				+0.5
2,608,389	+				-0.1
2,608,389	+				-2.0
2,608,390	-				+0.3
2,608,390	-				-1.2
2,608,390	-				-0.1
2,608,390	-				+1.2
2,608,390	-				+0.3
2,608,469	+				+0.4
2,608,470	-				-1.8
2,608,503	+		Xcc-8004.2697.1	0.11	+1.7
2,608,503	+		Xcc-8004.2697.1	0.11	-1.2
2,608,524	+		Xcc-8004.2697.1	0.13	+0.5
2,608,524	+		Xcc-8004.2697.1	0.13	+1.2
2,608,524	+		Xcc-8004.2697.1	0.13	-0.6
2,608,524	+		Xcc-8004.2697.1	0.13	+1.3
2,608,524	+		Xcc-8004.2697.1	0.13	+1.3
2,608,525	-		Xcc-8004.2697.1	0.13	-0.4
2,608,525	-		Xcc-8004.2697.1	0.13	-1.3
2,608,525	-		Xcc-8004.2697.1	0.13	+0.1
2,608,525	-		Xcc-8004.2697.1	0.13	-0.4
2,608,525	-		Xcc-8004.2697.1	0.13	-0.7
2,608,671	+		Xcc-8004.2697.1	0.27	-0.2
2,608,671	+		Xcc-8004.2697.1	0.27	-0.9
2,608,671	+		Xcc-8004.2697.1	0.27	+1.0
2,608,672	-		Xcc-8004.2697.1	0.27	-0.3
2,608,672	-		Xcc-8004.2697.1	0.27	-1.6
2,608,714	+		Xcc-8004.2697.1	0.31	-1.4
2,608,714	+		Xcc-8004.2697.1	0.31	-1.4
2,608,714	+		Xcc-8004.2697.1	0.31	-0.2
2,608,714	+		Xcc-8004.2697.1	0.31	-0.5
2,608,714	+		Xcc-8004.2697.1	0.31	-0.5
2,608,714	+		Xcc-8004.2697.1	0.31	-0.0
2,608,714	+		Xcc-8004.2697.1	0.31	+0.6
2,608,714	+		Xcc-8004.2697.1	0.31	+1.8
2,608,714	+		Xcc-8004.2697.1	0.31	+1.0
2,608,714	+		Xcc-8004.2697.1	0.31	+0.5
2,608,715	-		Xcc-8004.2697.1	0.31	+0.1
2,608,715	-		Xcc-8004.2697.1	0.31	-1.1
2,608,715	-		Xcc-8004.2697.1	0.31	-1.4
2,608,715	-		Xcc-8004.2697.1	0.31	+0.5
2,608,715	-		Xcc-8004.2697.1	0.31	-0.2
2,608,715	-		Xcc-8004.2697.1	0.31	-1.3
2,608,715	-		Xcc-8004.2697.1	0.31	+0.8
2,608,715	-		Xcc-8004.2697.1	0.31	-1.6
2,608,715	-		Xcc-8004.2697.1	0.31	+0.9
2,608,715	-		Xcc-8004.2697.1	0.31	-0.6
2,609,208	+		Xcc-8004.2697.1	0.78	+0.9
2,609,208	+		Xcc-8004.2697.1	0.78	-1.0
2,609,208	+		Xcc-8004.2697.1	0.78	+1.5
2,609,208	+		Xcc-8004.2697.1	0.78	+0.2
2,609,208	+		Xcc-8004.2697.1	0.78	-0.6
2,609,208	+		Xcc-8004.2697.1	0.78	-1.2
2,609,208	+		Xcc-8004.2697.1	0.78	-1.4
2,609,208	+		Xcc-8004.2697.1	0.78	+0.4
2,609,208	+		Xcc-8004.2697.1	0.78	+1.0
2,609,208	+		Xcc-8004.2697.1	0.78	+0.6
2,609,209	-		Xcc-8004.2697.1	0.78	-1.9
2,609,209	-		Xcc-8004.2697.1	0.78	+0.9
2,609,209	-		Xcc-8004.2697.1	0.78	+0.8
2,609,209	-		Xcc-8004.2697.1	0.78	+0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-0.5
2,609,209	-		Xcc-8004.2697.1	0.78	+0.0
2,609,209	-		Xcc-8004.2697.1	0.78	+1.0
2,609,209	-		Xcc-8004.2697.1	0.78	-0.8
2,609,209	-		Xcc-8004.2697.1	0.78	+0.4
2,609,209	-		Xcc-8004.2697.1	0.78	+1.3
2,609,209	-		Xcc-8004.2697.1	0.78	-0.6
2,609,209	-		Xcc-8004.2697.1	0.78	+1.7
2,609,209	-		Xcc-8004.2697.1	0.78	+0.1
2,609,250	+		Xcc-8004.2697.1	0.82	-0.9
2,609,250	+		Xcc-8004.2697.1	0.82	-1.1
2,609,251	-		Xcc-8004.2697.1	0.82	-0.3
2,609,251	-		Xcc-8004.2697.1	0.82	-1.6
2,609,288	+		Xcc-8004.2697.1	0.85	+0.1
2,609,288	+		Xcc-8004.2697.1	0.85	-0.9
2,609,288	+		Xcc-8004.2697.1	0.85	+1.4
2,609,289	-		Xcc-8004.2697.1	0.86	-1.2
2,609,289	-		Xcc-8004.2697.1	0.86	-1.1
2,609,367	-				+0.1
2,609,367	-				+0.5
2,609,367	-				+0.4
2,609,419	+				-0.0
2,609,419	+				-1.4
2,609,419	+				+0.9
2,609,419	+				+0.9
2,609,419	+				-1.3
2,609,419	+				-0.1
2,609,420	-				+1.2
2,609,469	+				+0.4
2,609,469	+				+0.5
2,609,470	-				-0.7
2,609,470	-				+0.2
2,609,487	+				+0.4
2,609,487	+				-2.2
2,609,513	+				+0.7
2,609,513	+				-0.9
2,609,514	-				-0.4
2,609,514	-				-1.0
2,609,514	-				+0.5
2,609,521	+				+0.6
2,609,521	+				+1.1
2,609,521	+				-0.0
2,609,522	-				+0.4
2,609,598	+				-0.5
2,609,598	+				+0.9
2,609,598	+				-2.2
2,609,598	+				-1.7
2,609,599	-				+0.8
2,609,599	-				-1.8
2,609,599	-				-1.1
2,609,599	-				+0.2
2,609,599	-				-0.2
2,609,599	-				-1.6
2,609,684	+				-0.8
2,609,684	+				+0.1
2,609,685	-				+1.2
2,609,685	-				-0.7
2,609,685	-				+1.0
2,609,695	+				-1.9
2,609,695	+				+1.3
2,609,696	-				+1.2
2,609,705	-				+0.1
2,609,727	+				+0.1
2,609,728	-				+0.8
2,609,728	-				+0.6
2,609,733	+				-0.3
2,609,733	+				+0.7
2,609,733	+				-0.1
2,609,733	+				+1.9
2,609,733	+				+1.4
2,609,733	+				-0.8
2,609,733	+				-1.5
2,609,733	+				+0.2
2,609,733	+				-0.3
2,609,733	+				-1.9
2,609,734	-				+0.3
2,609,734	-				+1.1
2,609,734	-				+1.8
2,609,734	-				-1.3
2,609,734	-				-1.9
2,609,824	+				-1.0
2,609,824	+				+0.3
2,609,824	+				+0.4
2,609,825	-				+1.4
2,609,838	-				+1.4
2,609,998	+		Xcc-8004.2698.1	0.34	+1.1
2,609,998	+		Xcc-8004.2698.1	0.34	+1.1
2,609,998	+		Xcc-8004.2698.1	0.34	-0.1
2,609,998	+		Xcc-8004.2698.1	0.34	-1.3
2,609,998	+		Xcc-8004.2698.1	0.34	-1.3
2,609,999	-		Xcc-8004.2698.1	0.35	+1.0
2,609,999	-		Xcc-8004.2698.1	0.35	+1.2
2,609,999	-		Xcc-8004.2698.1	0.35	-0.4
2,610,028	+		Xcc-8004.2698.1	0.40	+0.2
2,610,028	+		Xcc-8004.2698.1	0.40	-1.1
2,610,028	+		Xcc-8004.2698.1	0.40	-0.2
2,610,028	+		Xcc-8004.2698.1	0.40	-1.8
2,610,028	+		Xcc-8004.2698.1	0.40	+0.2
2,610,028	+		Xcc-8004.2698.1	0.40	-0.3
2,610,028	+		Xcc-8004.2698.1	0.40	-0.8
2,610,029	-		Xcc-8004.2698.1	0.40	-1.7
2,610,029	-		Xcc-8004.2698.1	0.40	+0.0
2,610,029	-		Xcc-8004.2698.1	0.40	+0.8
2,610,029	-		Xcc-8004.2698.1	0.40	-1.9
2,610,226	+		Xcc-8004.2698.1	0.79	+1.4
2,610,351	+				+0.1
2,610,351	+				+0.7
2,610,434	+				-0.9
2,610,434	+				+1.6
2,610,434	+				+0.0
2,610,434	+				+0.4
2,610,434	+				-0.9
2,610,434	+				+0.3
2,610,434	+				-0.4
2,610,434	+				+0.4
2,610,434	+				+0.4
2,610,434	+				-0.2
2,610,435	-				-0.2
2,610,435	-				-0.6
2,610,435	-				+0.6
2,610,435	-				-1.1
2,610,435	-				-0.9
2,610,435	-				-0.2
2,610,435	-				+0.1
2,610,435	-				+1.1