Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.257.1 and Xcc-8004.259.1 overlap by 4 nucleotides Xcc-8004.259.1 and Xcc-8004.260.1 are separated by 85 nucleotides
Xcc-8004.257.1: Xcc-8004.257.1 - lactoylglutathione lyase, at 251,547 to 251,984
Xcc-8004.257.1
Xcc-8004.259.1: Xcc-8004.259.1 - FIG01209938: hypothetical protein, at 251,981 to 252,883
Xcc-8004.259.1
Xcc-8004.260.1: Xcc-8004.260.1 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 252,969 to 254,249
Xcc-8004.260.1
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.062 kb on - strand at 251.062 kb on - strand at 251.062 kb on - strand at 251.062 kb on - strand at 251.245 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.276 kb on + strand at 251.276 kb on + strand at 251.356 kb on + strand at 251.356 kb on + strand at 251.357 kb on - strand at 251.416 kb on - strand at 251.537 kb on + strand at 251.538 kb on - strand at 251.538 kb on - strand at 251.551 kb on + strand at 251.551 kb on + strand at 251.552 kb on - strand at 251.552 kb on - strand at 251.555 kb on + strand at 251.611 kb on + strand, within Xcc-8004.257.1 at 251.611 kb on + strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.722 kb on + strand, within Xcc-8004.257.1 at 251.836 kb on + strand, within Xcc-8004.257.1 at 251.836 kb on + strand, within Xcc-8004.257.1 at 251.890 kb on + strand, within Xcc-8004.257.1 at 251.890 kb on + strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.926 kb on - strand, within Xcc-8004.257.1 at 251.926 kb on - strand, within Xcc-8004.257.1 at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.100 kb on - strand, within Xcc-8004.259.1 at 252.100 kb on - strand, within Xcc-8004.259.1 at 252.141 kb on + strand, within Xcc-8004.259.1 at 252.142 kb on - strand, within Xcc-8004.259.1 at 252.198 kb on + strand, within Xcc-8004.259.1 at 252.199 kb on - strand, within Xcc-8004.259.1 at 252.199 kb on - strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.345 kb on + strand, within Xcc-8004.259.1 at 252.346 kb on - strand, within Xcc-8004.259.1 at 252.346 kb on - strand, within Xcc-8004.259.1 at 252.859 kb on + strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.912 kb on + strand at 252.912 kb on + strand at 252.913 kb on - strand at 252.913 kb on - strand at 252.913 kb on - strand at 253.010 kb on + strand at 253.011 kb on - strand at 253.011 kb on - strand at 253.011 kb on - strand at 253.039 kb on - strand at 253.350 kb on + strand, within Xcc-8004.260.1 at 253.350 kb on + strand, within Xcc-8004.260.1 at 253.596 kb on + strand, within Xcc-8004.260.1 at 253.597 kb on - strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 251,062 - +0.9 251,062 - -0.7 251,062 - -0.1 251,062 - +0.8 251,245 + -0.6 251,268 + -0.5 251,268 + -0.6 251,268 + -0.5 251,268 + -1.1 251,268 + -0.2 251,268 + +0.2 251,268 + -0.8 251,276 + -0.5 251,276 + +1.9 251,356 + -0.5 251,356 + +0.1 251,357 - +0.8 251,416 - -0.5 251,537 + -0.2 251,538 - +0.4 251,538 - -0.6 251,551 + -0.8 251,551 + +0.3 251,552 - +0.4 251,552 - -0.2 251,555 + -2.1 251,611 + Xcc-8004.257.1 0.15 -0.4 251,611 + Xcc-8004.257.1 0.15 -1.8 251,612 - Xcc-8004.257.1 0.15 +0.0 251,612 - Xcc-8004.257.1 0.15 +0.1 251,612 - Xcc-8004.257.1 0.15 +1.6 251,612 - Xcc-8004.257.1 0.15 +1.7 251,612 - Xcc-8004.257.1 0.15 -0.3 251,722 + Xcc-8004.257.1 0.40 +0.6 251,836 + Xcc-8004.257.1 0.66 -0.1 251,836 + Xcc-8004.257.1 0.66 -0.1 251,890 + Xcc-8004.257.1 0.78 +1.1 251,890 + Xcc-8004.257.1 0.78 +0.7 251,891 - Xcc-8004.257.1 0.79 -1.2 251,891 - Xcc-8004.257.1 0.79 -2.2 251,891 - Xcc-8004.257.1 0.79 -0.3 251,891 - Xcc-8004.257.1 0.79 +0.9 251,923 + Xcc-8004.257.1 0.86 +1.0 251,923 + Xcc-8004.257.1 0.86 -1.0 251,923 + Xcc-8004.257.1 0.86 +1.3 251,923 + Xcc-8004.257.1 0.86 +0.9 251,923 + Xcc-8004.257.1 0.86 -0.6 251,923 + Xcc-8004.257.1 0.86 -0.1 251,923 + Xcc-8004.257.1 0.86 +0.9 251,923 + Xcc-8004.257.1 0.86 +0.8 251,923 + Xcc-8004.257.1 0.86 -0.3 251,923 + Xcc-8004.257.1 0.86 +0.5 251,923 + Xcc-8004.257.1 0.86 -0.6 251,924 - Xcc-8004.257.1 0.86 +0.0 251,924 - Xcc-8004.257.1 0.86 -0.1 251,924 - Xcc-8004.257.1 0.86 +0.4 251,924 - Xcc-8004.257.1 0.86 +1.2 251,924 - Xcc-8004.257.1 0.86 +0.5 251,924 - Xcc-8004.257.1 0.86 +0.2 251,924 - Xcc-8004.257.1 0.86 -0.4 251,924 - Xcc-8004.257.1 0.86 +1.3 251,924 - Xcc-8004.257.1 0.86 -0.2 251,924 - Xcc-8004.257.1 0.86 -0.9 251,924 - Xcc-8004.257.1 0.86 -0.8 251,925 + Xcc-8004.257.1 0.86 -1.1 251,925 + Xcc-8004.257.1 0.86 +1.0 251,925 + Xcc-8004.257.1 0.86 +1.5 251,925 + Xcc-8004.257.1 0.86 +0.7 251,925 + Xcc-8004.257.1 0.86 -0.8 251,925 + Xcc-8004.257.1 0.86 -1.9 251,926 - Xcc-8004.257.1 0.87 +0.0 251,926 - Xcc-8004.257.1 0.87 -0.8 252,030 + -2.4 252,030 + -0.1 252,030 + +0.8 252,030 + -1.3 252,030 + +1.2 252,030 + -0.2 252,031 - +1.0 252,031 - -1.9 252,031 - -0.1 252,031 - -1.5 252,031 - -1.8 252,031 - +0.4 252,031 - +0.7 252,090 + Xcc-8004.259.1 0.12 +1.0 252,090 + Xcc-8004.259.1 0.12 +1.2 252,090 + Xcc-8004.259.1 0.12 -2.2 252,090 + Xcc-8004.259.1 0.12 -0.8 252,090 + Xcc-8004.259.1 0.12 -0.8 252,090 + Xcc-8004.259.1 0.12 -0.7 252,090 + Xcc-8004.259.1 0.12 +0.7 252,091 - Xcc-8004.259.1 0.12 -0.8 252,091 - Xcc-8004.259.1 0.12 -0.7 252,091 - Xcc-8004.259.1 0.12 -0.1 252,091 - Xcc-8004.259.1 0.12 -0.8 252,099 + Xcc-8004.259.1 0.13 -1.9 252,099 + Xcc-8004.259.1 0.13 +0.8 252,099 + Xcc-8004.259.1 0.13 +1.0 252,099 + Xcc-8004.259.1 0.13 +1.1 252,099 + Xcc-8004.259.1 0.13 +0.3 252,100 - Xcc-8004.259.1 0.13 -1.2 252,100 - Xcc-8004.259.1 0.13 -0.5 252,141 + Xcc-8004.259.1 0.18 +0.6 252,142 - Xcc-8004.259.1 0.18 -0.7 252,198 + Xcc-8004.259.1 0.24 -2.8 252,199 - Xcc-8004.259.1 0.24 -1.3 252,199 - Xcc-8004.259.1 0.24 -2.1 252,303 + Xcc-8004.259.1 0.36 +0.5 252,303 + Xcc-8004.259.1 0.36 -0.3 252,303 + Xcc-8004.259.1 0.36 +0.1 252,303 + Xcc-8004.259.1 0.36 -0.3 252,303 + Xcc-8004.259.1 0.36 -0.0 252,303 + Xcc-8004.259.1 0.36 -0.6 252,304 - Xcc-8004.259.1 0.36 -0.2 252,304 - Xcc-8004.259.1 0.36 +1.7 252,304 - Xcc-8004.259.1 0.36 -0.9 252,304 - Xcc-8004.259.1 0.36 -1.1 252,345 + Xcc-8004.259.1 0.40 -1.2 252,346 - Xcc-8004.259.1 0.40 -0.1 252,346 - Xcc-8004.259.1 0.40 -1.2 252,859 + -0.1 252,860 - -1.0 252,860 - -2.1 252,860 - +0.0 252,860 - +1.0 252,898 + -0.0 252,898 + -1.7 252,898 + +0.1 252,898 + -1.5 252,898 + -2.4 252,899 - +1.7 252,899 - -0.8 252,899 - +0.9 252,899 - -0.4 252,912 + +0.6 252,912 + -1.4 252,913 - -2.2 252,913 - -0.2 252,913 - -2.2 253,010 + -0.2 253,011 - -1.3 253,011 - +0.7 253,011 - +0.5 253,039 - -0.7 253,350 + Xcc-8004.260.1 0.30 +0.2 253,350 + Xcc-8004.260.1 0.30 +0.9 253,596 + Xcc-8004.260.1 0.49 -2.0 253,597 - Xcc-8004.260.1 0.49 -1.0 253,833 + Xcc-8004.260.1 0.67 +1.0 253,833 + Xcc-8004.260.1 0.67 -1.3 253,833 + Xcc-8004.260.1 0.67 +0.8 253,833 + Xcc-8004.260.1 0.67 -0.9 253,834 - Xcc-8004.260.1 0.68 +0.9 253,834 - Xcc-8004.260.1 0.68 -1.9 253,834 - Xcc-8004.260.1 0.68 -1.0 253,834 - Xcc-8004.260.1 0.68 +1.7 253,834 - Xcc-8004.260.1 0.68 -0.6 253,834 - Xcc-8004.260.1 0.68 +0.0 253,834 - Xcc-8004.260.1 0.68 +0.2 253,834 - Xcc-8004.260.1 0.68 -0.9
Or see this region's nucleotide sequence