Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.234.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.232.1 and Xcc-8004.233.1 are separated by 3 nucleotidesXcc-8004.233.1 and Xcc-8004.234.1 overlap by 4 nucleotidesXcc-8004.234.1 and Xcc-8004.235.1 are separated by 270 nucleotidesXcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotides Xcc-8004.232.1: Xcc-8004.232.1 - Phosphohistidine phosphatase SixA, at 229,621 to 230,097 Xcc-8004.232.1 Xcc-8004.233.1: Xcc-8004.233.1 - FIG01211637: hypothetical protein, at 230,101 to 230,673 Xcc-8004.233.1 Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652 Xcc-8004.234.1 Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351 Xcc-8004.235.1 Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271 Xcc-8004.236.1 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.864 kb on + strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.865 kb on - strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.996 kb on + strand, within Xcc-8004.232.1at 229.997 kb on - strand, within Xcc-8004.232.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.353 kb on + strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.354 kb on - strand, within Xcc-8004.233.1at 230.398 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.542 kb on + strand, within Xcc-8004.233.1at 230.543 kb on - strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.568 kb on + strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.569 kb on - strand, within Xcc-8004.233.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.982 kb on + strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 230.983 kb on - strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.150 kb on + strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.151 kb on - strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.183 kb on + strand, within Xcc-8004.234.1at 231.184 kb on - strand, within Xcc-8004.234.1at 231.184 kb on - strand, within Xcc-8004.234.1at 231.294 kb on + strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.295 kb on - strand, within Xcc-8004.234.1at 231.306 kb on + strand, within Xcc-8004.234.1at 231.307 kb on - strand, within Xcc-8004.234.1at 231.328 kb on - strand, within Xcc-8004.234.1at 231.586 kb on + strand, within Xcc-8004.234.1at 231.586 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.600 kb on + strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1at 231.601 kb on - strand, within Xcc-8004.234.1at 231.720 kb on + strand, within Xcc-8004.234.1at 231.721 kb on - strand, within Xcc-8004.234.1at 231.721 kb on - strand, within Xcc-8004.234.1at 231.837 kb on + strand, within Xcc-8004.234.1at 231.837 kb on + strand, within Xcc-8004.234.1at 231.837 kb on + strand, within Xcc-8004.234.1at 231.838 kb on - strand, within Xcc-8004.234.1at 231.838 kb on - strand, within Xcc-8004.234.1at 231.849 kb on + strand, within Xcc-8004.234.1at 231.850 kb on - strand, within Xcc-8004.234.1at 231.850 kb on - strand, within Xcc-8004.234.1at 231.894 kb on + strand, within Xcc-8004.234.1at 231.894 kb on + strand, within Xcc-8004.234.1at 231.894 kb on + strand, within Xcc-8004.234.1at 231.894 kb on + strand, within Xcc-8004.234.1at 231.894 kb on + strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.895 kb on - strand, within Xcc-8004.234.1at 231.933 kb on + strand, within Xcc-8004.234.1at 231.934 kb on - strand, within Xcc-8004.234.1at 232.044 kb on - strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.272 kb on + strand, within Xcc-8004.234.1at 232.273 kb on - strand, within Xcc-8004.234.1at 232.273 kb on - strand, within Xcc-8004.234.1at 232.273 kb on - strand, within Xcc-8004.234.1at 232.273 kb on - strand, within Xcc-8004.234.1at 232.413 kb on + strand, within Xcc-8004.234.1at 232.413 kb on + strand, within Xcc-8004.234.1at 232.413 kb on + strand, within Xcc-8004.234.1at 232.414 kb on - strand, within Xcc-8004.234.1at 232.482 kb on + strandat 232.483 kb on - strandat 232.483 kb on - strandat 232.483 kb on - strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.551 kb on + strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.552 kb on - strandat 232.676 kb on + strandat 232.676 kb on + strandat 232.676 kb on + strandat 232.677 kb on - strandat 232.677 kb on - strandat 232.677 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 232.833 kb on - strandat 233.052 kb on - strand, within Xcc-8004.235.1at 233.071 kb on - strand, within Xcc-8004.235.1at 233.071 kb on - strand, within Xcc-8004.235.1at 233.147 kb on + strand, within Xcc-8004.235.1at 233.148 kb on - strand, within Xcc-8004.235.1at 233.148 kb on - strand, within Xcc-8004.235.1at 233.148 kb on - strand, within Xcc-8004.235.1at 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.429 kb on - strandat 233.429 kb on - strandat 233.429 kb on - strandat 233.528 kb on + strandat 233.529 kb on - strandat 233.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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229,864 + Xcc-8004.232.1 0.51 +0.3
229,864 + Xcc-8004.232.1 0.51 -0.2
229,864 + Xcc-8004.232.1 0.51 +0.4
229,864 + Xcc-8004.232.1 0.51 +0.8
229,864 + Xcc-8004.232.1 0.51 +0.3
229,864 + Xcc-8004.232.1 0.51 -0.8
229,865 - Xcc-8004.232.1 0.51 -1.6
229,865 - Xcc-8004.232.1 0.51 -2.6
229,865 - Xcc-8004.232.1 0.51 +1.7
229,865 - Xcc-8004.232.1 0.51 -1.4
229,865 - Xcc-8004.232.1 0.51 +0.4
229,865 - Xcc-8004.232.1 0.51 -1.0
229,865 - Xcc-8004.232.1 0.51 -0.5
229,865 - Xcc-8004.232.1 0.51 -0.5
229,865 - Xcc-8004.232.1 0.51 +0.9
229,865 - Xcc-8004.232.1 0.51 +1.4
229,865 - Xcc-8004.232.1 0.51 +0.3
229,996 + Xcc-8004.232.1 0.79 +0.4
229,996 + Xcc-8004.232.1 0.79 +1.1
229,996 + Xcc-8004.232.1 0.79 -0.6
229,997 - Xcc-8004.232.1 0.79 -0.6
230,353 + Xcc-8004.233.1 0.44 +0.4
230,353 + Xcc-8004.233.1 0.44 +0.2
230,353 + Xcc-8004.233.1 0.44 +0.3
230,354 - Xcc-8004.233.1 0.44 -0.5
230,354 - Xcc-8004.233.1 0.44 -0.9
230,354 - Xcc-8004.233.1 0.44 +1.7
230,398 + Xcc-8004.233.1 0.52 -0.2
230,542 + Xcc-8004.233.1 0.77 -1.2
230,542 + Xcc-8004.233.1 0.77 -0.7
230,542 + Xcc-8004.233.1 0.77 +0.8
230,542 + Xcc-8004.233.1 0.77 +0.1
230,543 - Xcc-8004.233.1 0.77 +0.5
230,568 + Xcc-8004.233.1 0.82 +0.7
230,568 + Xcc-8004.233.1 0.82 -0.2
230,569 - Xcc-8004.233.1 0.82 -0.6
230,569 - Xcc-8004.233.1 0.82 -0.5
230,569 - Xcc-8004.233.1 0.82 -0.3
230,569 - Xcc-8004.233.1 0.82 -2.3
230,569 - Xcc-8004.233.1 0.82 +1.1
230,569 - Xcc-8004.233.1 0.82 +0.6
230,569 - Xcc-8004.233.1 0.82 -0.5
230,982 + Xcc-8004.234.1 0.16 +1.0
230,982 + Xcc-8004.234.1 0.16 -1.1
230,983 - Xcc-8004.234.1 0.16 +0.7
230,983 - Xcc-8004.234.1 0.16 +0.1
230,983 - Xcc-8004.234.1 0.16 -0.1
230,983 - Xcc-8004.234.1 0.16 +0.7
230,983 - Xcc-8004.234.1 0.16 -0.1
230,983 - Xcc-8004.234.1 0.16 -1.2
230,983 - Xcc-8004.234.1 0.16 -1.3
231,150 + Xcc-8004.234.1 0.24 -0.9
231,150 + Xcc-8004.234.1 0.24 -1.9
231,150 + Xcc-8004.234.1 0.24 -0.9
231,150 + Xcc-8004.234.1 0.24 -0.1
231,150 + Xcc-8004.234.1 0.24 +0.4
231,150 + Xcc-8004.234.1 0.24 -0.5
231,150 + Xcc-8004.234.1 0.24 -1.3
231,150 + Xcc-8004.234.1 0.24 +1.1
231,150 + Xcc-8004.234.1 0.24 -1.6
231,150 + Xcc-8004.234.1 0.24 -0.3
231,151 - Xcc-8004.234.1 0.24 -0.6
231,151 - Xcc-8004.234.1 0.24 +0.9
231,151 - Xcc-8004.234.1 0.24 +0.4
231,151 - Xcc-8004.234.1 0.24 -1.9
231,151 - Xcc-8004.234.1 0.24 +1.1
231,151 - Xcc-8004.234.1 0.24 +1.1
231,151 - Xcc-8004.234.1 0.24 -0.9
231,183 + Xcc-8004.234.1 0.26 +0.1
231,183 + Xcc-8004.234.1 0.26 +0.1
231,183 + Xcc-8004.234.1 0.26 +2.1
231,183 + Xcc-8004.234.1 0.26 +0.8
231,183 + Xcc-8004.234.1 0.26 +1.7
231,183 + Xcc-8004.234.1 0.26 +1.0
231,184 - Xcc-8004.234.1 0.26 +1.1
231,184 - Xcc-8004.234.1 0.26 -1.1
231,294 + Xcc-8004.234.1 0.31 +0.9
231,295 - Xcc-8004.234.1 0.32 -0.4
231,295 - Xcc-8004.234.1 0.32 +1.4
231,295 - Xcc-8004.234.1 0.32 +1.1
231,306 + Xcc-8004.234.1 0.32 +0.1
231,307 - Xcc-8004.234.1 0.32 +1.7
231,328 - Xcc-8004.234.1 0.33 -0.1
231,586 + Xcc-8004.234.1 0.46 +2.7
231,586 + Xcc-8004.234.1 0.46 +2.4
231,600 + Xcc-8004.234.1 0.47 +2.7
231,600 + Xcc-8004.234.1 0.47 +0.5
231,600 + Xcc-8004.234.1 0.47 -0.2
231,600 + Xcc-8004.234.1 0.47 -2.3
231,600 + Xcc-8004.234.1 0.47 +0.4
231,600 + Xcc-8004.234.1 0.47 -0.0
231,600 + Xcc-8004.234.1 0.47 +0.2
231,600 + Xcc-8004.234.1 0.47 -1.8
231,601 - Xcc-8004.234.1 0.47 +0.9
231,601 - Xcc-8004.234.1 0.47 +1.4
231,601 - Xcc-8004.234.1 0.47 +0.1
231,720 + Xcc-8004.234.1 0.53 -1.3
231,721 - Xcc-8004.234.1 0.53 +0.0
231,721 - Xcc-8004.234.1 0.53 -1.4
231,837 + Xcc-8004.234.1 0.59 +1.7
231,837 + Xcc-8004.234.1 0.59 -0.9
231,837 + Xcc-8004.234.1 0.59 +0.2
231,838 - Xcc-8004.234.1 0.59 +0.4
231,838 - Xcc-8004.234.1 0.59 -0.9
231,849 + Xcc-8004.234.1 0.59 +0.1
231,850 - Xcc-8004.234.1 0.60 +0.1
231,850 - Xcc-8004.234.1 0.60 -0.1
231,894 + Xcc-8004.234.1 0.62 -0.1
231,894 + Xcc-8004.234.1 0.62 -0.9
231,894 + Xcc-8004.234.1 0.62 -0.2
231,894 + Xcc-8004.234.1 0.62 +2.7
231,894 + Xcc-8004.234.1 0.62 -0.5
231,895 - Xcc-8004.234.1 0.62 +0.4
231,895 - Xcc-8004.234.1 0.62 +1.7
231,895 - Xcc-8004.234.1 0.62 -0.8
231,895 - Xcc-8004.234.1 0.62 +1.1
231,895 - Xcc-8004.234.1 0.62 -0.4
231,895 - Xcc-8004.234.1 0.62 +1.7
231,933 + Xcc-8004.234.1 0.64 +0.5
231,934 - Xcc-8004.234.1 0.64 -0.2
232,044 - Xcc-8004.234.1 0.69 -0.3
232,272 + Xcc-8004.234.1 0.81 +0.2
232,272 + Xcc-8004.234.1 0.81 +1.7
232,272 + Xcc-8004.234.1 0.81 -0.3
232,272 + Xcc-8004.234.1 0.81 +2.7
232,272 + Xcc-8004.234.1 0.81 -0.6
232,272 + Xcc-8004.234.1 0.81 +0.9
232,273 - Xcc-8004.234.1 0.81 -0.2
232,273 - Xcc-8004.234.1 0.81 -0.8
232,273 - Xcc-8004.234.1 0.81 -0.3
232,273 - Xcc-8004.234.1 0.81 +0.2
232,413 + Xcc-8004.234.1 0.88 +0.2
232,413 + Xcc-8004.234.1 0.88 +1.7
232,413 + Xcc-8004.234.1 0.88 -1.0
232,414 - Xcc-8004.234.1 0.88 +0.8
232,482 + -1.6
232,483 - +0.1
232,483 - +0.3
232,483 - +0.7
232,551 + -1.0
232,551 + +0.8
232,551 + +1.1
232,551 + +0.7
232,551 + +1.1
232,551 + +1.1
232,551 + -1.0
232,551 + -0.1
232,552 - -0.5
232,552 - -0.4
232,552 - -1.6
232,552 - -1.0
232,552 - -0.1
232,552 - -0.8
232,552 - +0.3
232,552 - +1.0
232,552 - +0.1
232,676 + -2.3
232,676 + -0.4
232,676 + +0.2
232,677 - -0.3
232,677 - +1.2
232,677 - +0.2
232,833 - -0.3
232,833 - -0.1
232,833 - -0.5
232,833 - -0.6
232,833 - +0.9
232,833 - -1.0
232,833 - -1.2
233,052 - Xcc-8004.235.1 0.30 +1.3
233,071 - Xcc-8004.235.1 0.34 +2.3
233,071 - Xcc-8004.235.1 0.34 -1.0
233,147 + Xcc-8004.235.1 0.52 -0.9
233,148 - Xcc-8004.235.1 0.52 -1.0
233,148 - Xcc-8004.235.1 0.52 +0.3
233,148 - Xcc-8004.235.1 0.52 -0.3
233,428 + -1.0
233,428 + -0.2
233,428 + -1.2
233,428 + -0.2
233,428 + +1.5
233,428 + -0.2
233,428 + -0.1
233,429 - +1.1
233,429 - +0.3
233,429 - -1.0
233,528 + -1.1
233,529 - +2.7
233,529 - +0.3

Or see this region's nucleotide sequence