Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2299.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2297.1 and Xcc-8004.2298.1 are separated by 75 nucleotidesXcc-8004.2298.1 and Xcc-8004.2299.1 overlap by 4 nucleotidesXcc-8004.2299.1 and Xcc-8004.2300.1 overlap by 4 nucleotides Xcc-8004.2297.1: Xcc-8004.2297.1 - FIG01210827: hypothetical protein, at 2,248,904 to 2,249,194 Xcc-8004.2297.1 Xcc-8004.2298.1: Xcc-8004.2298.1 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 2,249,270 to 2,250,088 Xcc-8004.2298.1 Xcc-8004.2299.1: Xcc-8004.2299.1 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 2,250,085 to 2,251,494 Xcc-8004.2299.1 Xcc-8004.2300.1: Xcc-8004.2300.1 - Ethanolamine permease, at 2,251,491 to 2,252,846 Xcc-8004.2300.1 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2249.123 kb on - strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.156 kb on + strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.157 kb on - strand, within Xcc-8004.2297.1at 2249.192 kb on + strandat 2249.193 kb on - strandat 2249.397 kb on + strand, within Xcc-8004.2298.1at 2249.424 kb on + strand, within Xcc-8004.2298.1at 2249.424 kb on + strand, within Xcc-8004.2298.1at 2249.425 kb on - strand, within Xcc-8004.2298.1at 2249.425 kb on - strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.496 kb on + strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.497 kb on - strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.505 kb on + strand, within Xcc-8004.2298.1at 2249.506 kb on - strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.838 kb on + strand, within Xcc-8004.2298.1at 2249.839 kb on - strand, within Xcc-8004.2298.1at 2249.839 kb on - strand, within Xcc-8004.2298.1at 2249.863 kb on + strand, within Xcc-8004.2298.1at 2249.863 kb on + strand, within Xcc-8004.2298.1at 2249.864 kb on - strand, within Xcc-8004.2298.1at 2249.864 kb on - strand, within Xcc-8004.2298.1at 2250.249 kb on - strand, within Xcc-8004.2299.1at 2250.278 kb on + strand, within Xcc-8004.2299.1at 2250.279 kb on - strand, within Xcc-8004.2299.1at 2250.279 kb on - strand, within Xcc-8004.2299.1at 2250.279 kb on - strand, within Xcc-8004.2299.1at 2250.279 kb on - strand, within Xcc-8004.2299.1at 2250.395 kb on + strand, within Xcc-8004.2299.1at 2250.395 kb on + strand, within Xcc-8004.2299.1at 2250.395 kb on + strand, within Xcc-8004.2299.1at 2250.396 kb on - strand, within Xcc-8004.2299.1at 2250.396 kb on - strand, within Xcc-8004.2299.1at 2250.396 kb on - strand, within Xcc-8004.2299.1at 2250.396 kb on - strand, within Xcc-8004.2299.1at 2250.396 kb on - strand, within Xcc-8004.2299.1at 2250.488 kb on + strand, within Xcc-8004.2299.1at 2250.489 kb on - strand, within Xcc-8004.2299.1at 2250.489 kb on - strand, within Xcc-8004.2299.1at 2250.516 kb on + strand, within Xcc-8004.2299.1at 2250.516 kb on + strand, within Xcc-8004.2299.1at 2250.517 kb on - strand, within Xcc-8004.2299.1at 2250.554 kb on + strand, within Xcc-8004.2299.1at 2250.555 kb on - strand, within Xcc-8004.2299.1at 2250.635 kb on + strand, within Xcc-8004.2299.1at 2250.635 kb on + strand, within Xcc-8004.2299.1at 2250.636 kb on - strand, within Xcc-8004.2299.1at 2250.636 kb on - strand, within Xcc-8004.2299.1at 2250.636 kb on - strand, within Xcc-8004.2299.1at 2250.810 kb on + strand, within Xcc-8004.2299.1at 2250.811 kb on - strand, within Xcc-8004.2299.1at 2250.846 kb on - strand, within Xcc-8004.2299.1at 2250.945 kb on - strand, within Xcc-8004.2299.1at 2250.945 kb on - strand, within Xcc-8004.2299.1at 2251.708 kb on - strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.738 kb on + strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.739 kb on - strand, within Xcc-8004.2300.1at 2251.948 kb on + strand, within Xcc-8004.2300.1at 2251.948 kb on + strand, within Xcc-8004.2300.1at 2252.144 kb on + strand, within Xcc-8004.2300.1at 2252.144 kb on + strand, within Xcc-8004.2300.1at 2252.161 kb on + strand, within Xcc-8004.2300.1at 2252.161 kb on + strand, within Xcc-8004.2300.1at 2252.161 kb on + strand, within Xcc-8004.2300.1at 2252.161 kb on + strand, within Xcc-8004.2300.1at 2252.161 kb on + strand, within Xcc-8004.2300.1at 2252.162 kb on - strand, within Xcc-8004.2300.1at 2252.162 kb on - strand, within Xcc-8004.2300.1at 2252.458 kb on + strand, within Xcc-8004.2300.1at 2252.458 kb on + strand, within Xcc-8004.2300.1at 2252.458 kb on + strand, within Xcc-8004.2300.1at 2252.458 kb on + strand, within Xcc-8004.2300.1at 2252.458 kb on + strand, within Xcc-8004.2300.1at 2252.459 kb on - strand, within Xcc-8004.2300.1at 2252.459 kb on - strand, within Xcc-8004.2300.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
2,249,123 - Xcc-8004.2297.1 0.75 -1.8
2,249,156 + Xcc-8004.2297.1 0.87 -0.4
2,249,156 + Xcc-8004.2297.1 0.87 -0.8
2,249,156 + Xcc-8004.2297.1 0.87 +0.4
2,249,157 - Xcc-8004.2297.1 0.87 -2.5
2,249,157 - Xcc-8004.2297.1 0.87 +0.5
2,249,157 - Xcc-8004.2297.1 0.87 +1.0
2,249,157 - Xcc-8004.2297.1 0.87 +1.5
2,249,157 - Xcc-8004.2297.1 0.87 +2.2
2,249,192 + -1.7
2,249,193 - -0.7
2,249,397 + Xcc-8004.2298.1 0.16 +0.3
2,249,424 + Xcc-8004.2298.1 0.19 -2.0
2,249,424 + Xcc-8004.2298.1 0.19 -1.1
2,249,425 - Xcc-8004.2298.1 0.19 +1.7
2,249,425 - Xcc-8004.2298.1 0.19 -0.4
2,249,496 + Xcc-8004.2298.1 0.28 +1.0
2,249,496 + Xcc-8004.2298.1 0.28 +0.5
2,249,496 + Xcc-8004.2298.1 0.28 -0.1
2,249,497 - Xcc-8004.2298.1 0.28 -0.2
2,249,497 - Xcc-8004.2298.1 0.28 +0.2
2,249,497 - Xcc-8004.2298.1 0.28 +0.7
2,249,497 - Xcc-8004.2298.1 0.28 -0.0
2,249,505 + Xcc-8004.2298.1 0.29 -0.7
2,249,505 + Xcc-8004.2298.1 0.29 +0.9
2,249,505 + Xcc-8004.2298.1 0.29 +0.6
2,249,505 + Xcc-8004.2298.1 0.29 +1.5
2,249,506 - Xcc-8004.2298.1 0.29 -1.5
2,249,838 + Xcc-8004.2298.1 0.69 -1.5
2,249,838 + Xcc-8004.2298.1 0.69 +1.9
2,249,838 + Xcc-8004.2298.1 0.69 +1.4
2,249,839 - Xcc-8004.2298.1 0.69 -0.0
2,249,839 - Xcc-8004.2298.1 0.69 +1.6
2,249,863 + Xcc-8004.2298.1 0.72 -1.9
2,249,863 + Xcc-8004.2298.1 0.72 -0.9
2,249,864 - Xcc-8004.2298.1 0.73 -1.4
2,249,864 - Xcc-8004.2298.1 0.73 -0.9
2,250,249 - Xcc-8004.2299.1 0.12 -0.6
2,250,278 + Xcc-8004.2299.1 0.14 -1.3
2,250,279 - Xcc-8004.2299.1 0.14 -0.6
2,250,279 - Xcc-8004.2299.1 0.14 -0.7
2,250,279 - Xcc-8004.2299.1 0.14 -1.4
2,250,279 - Xcc-8004.2299.1 0.14 -0.3
2,250,395 + Xcc-8004.2299.1 0.22 +0.4
2,250,395 + Xcc-8004.2299.1 0.22 +0.6
2,250,395 + Xcc-8004.2299.1 0.22 +1.1
2,250,396 - Xcc-8004.2299.1 0.22 +1.1
2,250,396 - Xcc-8004.2299.1 0.22 -1.3
2,250,396 - Xcc-8004.2299.1 0.22 -0.9
2,250,396 - Xcc-8004.2299.1 0.22 -0.7
2,250,396 - Xcc-8004.2299.1 0.22 -0.8
2,250,488 + Xcc-8004.2299.1 0.29 +1.1
2,250,489 - Xcc-8004.2299.1 0.29 -2.5
2,250,489 - Xcc-8004.2299.1 0.29 -0.8
2,250,516 + Xcc-8004.2299.1 0.31 +0.3
2,250,516 + Xcc-8004.2299.1 0.31 +0.9
2,250,517 - Xcc-8004.2299.1 0.31 +0.0
2,250,554 + Xcc-8004.2299.1 0.33 -0.1
2,250,555 - Xcc-8004.2299.1 0.33 -0.6
2,250,635 + Xcc-8004.2299.1 0.39 +0.6
2,250,635 + Xcc-8004.2299.1 0.39 -2.9
2,250,636 - Xcc-8004.2299.1 0.39 -1.6
2,250,636 - Xcc-8004.2299.1 0.39 -1.2
2,250,636 - Xcc-8004.2299.1 0.39 -0.9
2,250,810 + Xcc-8004.2299.1 0.51 +0.4
2,250,811 - Xcc-8004.2299.1 0.51 -0.7
2,250,846 - Xcc-8004.2299.1 0.54 -0.9
2,250,945 - Xcc-8004.2299.1 0.61 +0.6
2,250,945 - Xcc-8004.2299.1 0.61 -0.6
2,251,708 - Xcc-8004.2300.1 0.16 -0.7
2,251,738 + Xcc-8004.2300.1 0.18 -0.4
2,251,738 + Xcc-8004.2300.1 0.18 -0.1
2,251,738 + Xcc-8004.2300.1 0.18 +0.6
2,251,738 + Xcc-8004.2300.1 0.18 -0.2
2,251,738 + Xcc-8004.2300.1 0.18 -0.2
2,251,738 + Xcc-8004.2300.1 0.18 +0.2
2,251,738 + Xcc-8004.2300.1 0.18 +0.9
2,251,738 + Xcc-8004.2300.1 0.18 +0.1
2,251,738 + Xcc-8004.2300.1 0.18 -1.8
2,251,739 - Xcc-8004.2300.1 0.18 +0.5
2,251,739 - Xcc-8004.2300.1 0.18 -1.8
2,251,739 - Xcc-8004.2300.1 0.18 -0.3
2,251,739 - Xcc-8004.2300.1 0.18 +1.0
2,251,739 - Xcc-8004.2300.1 0.18 -0.1
2,251,739 - Xcc-8004.2300.1 0.18 -0.2
2,251,948 + Xcc-8004.2300.1 0.34 +0.8
2,251,948 + Xcc-8004.2300.1 0.34 -0.8
2,252,144 + Xcc-8004.2300.1 0.48 +0.8
2,252,144 + Xcc-8004.2300.1 0.48 +0.4
2,252,161 + Xcc-8004.2300.1 0.49 -1.3
2,252,161 + Xcc-8004.2300.1 0.49 -0.6
2,252,161 + Xcc-8004.2300.1 0.49 +0.2
2,252,161 + Xcc-8004.2300.1 0.49 -1.5
2,252,161 + Xcc-8004.2300.1 0.49 -0.2
2,252,162 - Xcc-8004.2300.1 0.49 -0.2
2,252,162 - Xcc-8004.2300.1 0.49 +1.4
2,252,458 + Xcc-8004.2300.1 0.71 -0.4
2,252,458 + Xcc-8004.2300.1 0.71 -1.9
2,252,458 + Xcc-8004.2300.1 0.71 +1.0
2,252,458 + Xcc-8004.2300.1 0.71 +1.7
2,252,458 + Xcc-8004.2300.1 0.71 -0.7
2,252,459 - Xcc-8004.2300.1 0.71 -1.5
2,252,459 - Xcc-8004.2300.1 0.71 -0.0

Or see this region's nucleotide sequence