Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2238.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2235.1 and Xcc-8004.2237.1 overlap by 61 nucleotidesXcc-8004.2237.1 and Xcc-8004.2238.1 are separated by 234 nucleotidesXcc-8004.2238.1 and Xcc-8004.2239.1 are separated by 9 nucleotidesXcc-8004.2239.1 and Xcc-8004.2240.1 are separated by 39 nucleotides Xcc-8004.2235.1: Xcc-8004.2235.1 - Lhr-like helicases, at 2,184,282 to 2,188,676 Xcc-8004.2235.1 Xcc-8004.2237.1: Xcc-8004.2237.1 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 2,188,616 to 2,189,239 Xcc-8004.2237.1 Xcc-8004.2238.1: Xcc-8004.2238.1 - chemotaxis protein, at 2,189,474 to 2,191,195 Xcc-8004.2238.1 Xcc-8004.2239.1: Xcc-8004.2239.1 - Positive regulator of CheA protein activity (CheW), at 2,191,205 to 2,191,714 Xcc-8004.2239.1 Xcc-8004.2240.1: Xcc-8004.2240.1 - Diguanylate cyclase (GGDEF domain) with GAF sensor, at 2,191,754 to 2,192,887 Xcc-8004.2240.1 Position (kb) 2189 2190 2191 2192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.980 kb on - strand, within Xcc-8004.2237.1at 2188.980 kb on - strand, within Xcc-8004.2237.1at 2189.007 kb on + strand, within Xcc-8004.2237.1at 2189.007 kb on + strand, within Xcc-8004.2237.1at 2189.008 kb on - strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.171 kb on + strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.205 kb on + strandat 2189.206 kb on - strandat 2189.206 kb on - strandat 2189.301 kb on - strandat 2189.364 kb on + strandat 2189.365 kb on - strandat 2189.436 kb on - strandat 2189.448 kb on - strandat 2189.541 kb on + strandat 2189.541 kb on + strandat 2189.541 kb on + strandat 2189.542 kb on - strandat 2189.542 kb on - strandat 2189.542 kb on - strandat 2189.624 kb on + strandat 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.723 kb on + strand, within Xcc-8004.2238.1at 2189.724 kb on - strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.907 kb on - strand, within Xcc-8004.2238.1at 2189.907 kb on - strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.331 kb on - strand, within Xcc-8004.2238.1at 2190.626 kb on + strand, within Xcc-8004.2238.1at 2190.626 kb on + strand, within Xcc-8004.2238.1at 2190.627 kb on - strand, within Xcc-8004.2238.1at 2190.855 kb on + strand, within Xcc-8004.2238.1at 2190.918 kb on + strand, within Xcc-8004.2238.1at 2191.038 kb on + strandat 2191.061 kb on - strandat 2191.148 kb on + strandat 2191.148 kb on + strandat 2191.149 kb on - strandat 2191.259 kb on + strand, within Xcc-8004.2239.1at 2191.259 kb on + strand, within Xcc-8004.2239.1at 2191.259 kb on + strand, within Xcc-8004.2239.1at 2191.328 kb on + strand, within Xcc-8004.2239.1at 2191.369 kb on - strand, within Xcc-8004.2239.1at 2192.059 kb on + strand, within Xcc-8004.2240.1at 2192.059 kb on + strand, within Xcc-8004.2240.1at 2192.059 kb on + strand, within Xcc-8004.2240.1at 2192.060 kb on - strand, within Xcc-8004.2240.1at 2192.060 kb on - strand, within Xcc-8004.2240.1at 2192.060 kb on - strand, within Xcc-8004.2240.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,188,979 + Xcc-8004.2237.1 0.58 +1.8
2,188,979 + Xcc-8004.2237.1 0.58 +0.8
2,188,979 + Xcc-8004.2237.1 0.58 +0.0
2,188,979 + Xcc-8004.2237.1 0.58 +0.4
2,188,980 - Xcc-8004.2237.1 0.58 -1.1
2,188,980 - Xcc-8004.2237.1 0.58 -0.3
2,189,007 + Xcc-8004.2237.1 0.63 -0.4
2,189,007 + Xcc-8004.2237.1 0.63 -1.1
2,189,008 - Xcc-8004.2237.1 0.63 -0.6
2,189,016 + Xcc-8004.2237.1 0.64 -0.7
2,189,016 + Xcc-8004.2237.1 0.64 -0.3
2,189,016 + Xcc-8004.2237.1 0.64 -1.8
2,189,016 + Xcc-8004.2237.1 0.64 -0.0
2,189,016 + Xcc-8004.2237.1 0.64 +0.2
2,189,016 + Xcc-8004.2237.1 0.64 +1.0
2,189,016 + Xcc-8004.2237.1 0.64 +1.2
2,189,016 + Xcc-8004.2237.1 0.64 +0.8
2,189,017 - Xcc-8004.2237.1 0.64 -1.4
2,189,017 - Xcc-8004.2237.1 0.64 -0.6
2,189,017 - Xcc-8004.2237.1 0.64 +0.5
2,189,017 - Xcc-8004.2237.1 0.64 -3.1
2,189,017 - Xcc-8004.2237.1 0.64 -0.7
2,189,017 - Xcc-8004.2237.1 0.64 -1.4
2,189,017 - Xcc-8004.2237.1 0.64 -1.2
2,189,017 - Xcc-8004.2237.1 0.64 +0.6
2,189,017 - Xcc-8004.2237.1 0.64 +1.0
2,189,017 - Xcc-8004.2237.1 0.64 -0.4
2,189,017 - Xcc-8004.2237.1 0.64 +0.5
2,189,022 + Xcc-8004.2237.1 0.65 -2.3
2,189,022 + Xcc-8004.2237.1 0.65 +0.8
2,189,022 + Xcc-8004.2237.1 0.65 +0.0
2,189,022 + Xcc-8004.2237.1 0.65 -2.3
2,189,022 + Xcc-8004.2237.1 0.65 -1.4
2,189,022 + Xcc-8004.2237.1 0.65 -0.3
2,189,022 + Xcc-8004.2237.1 0.65 -0.3
2,189,022 + Xcc-8004.2237.1 0.65 +0.6
2,189,022 + Xcc-8004.2237.1 0.65 +1.3
2,189,022 + Xcc-8004.2237.1 0.65 -2.0
2,189,022 + Xcc-8004.2237.1 0.65 -0.7
2,189,022 + Xcc-8004.2237.1 0.65 +0.8
2,189,022 + Xcc-8004.2237.1 0.65 +2.2
2,189,022 + Xcc-8004.2237.1 0.65 -2.6
2,189,022 + Xcc-8004.2237.1 0.65 +1.3
2,189,023 - Xcc-8004.2237.1 0.65 -1.1
2,189,023 - Xcc-8004.2237.1 0.65 -0.7
2,189,023 - Xcc-8004.2237.1 0.65 -0.8
2,189,023 - Xcc-8004.2237.1 0.65 +0.0
2,189,023 - Xcc-8004.2237.1 0.65 -0.6
2,189,023 - Xcc-8004.2237.1 0.65 -0.9
2,189,023 - Xcc-8004.2237.1 0.65 -0.1
2,189,023 - Xcc-8004.2237.1 0.65 -0.6
2,189,023 - Xcc-8004.2237.1 0.65 +0.9
2,189,023 - Xcc-8004.2237.1 0.65 -1.1
2,189,023 - Xcc-8004.2237.1 0.65 +1.3
2,189,023 - Xcc-8004.2237.1 0.65 +1.5
2,189,023 - Xcc-8004.2237.1 0.65 +0.8
2,189,023 - Xcc-8004.2237.1 0.65 -0.2
2,189,023 - Xcc-8004.2237.1 0.65 +1.5
2,189,109 + Xcc-8004.2237.1 0.79 -0.0
2,189,109 + Xcc-8004.2237.1 0.79 -0.1
2,189,109 + Xcc-8004.2237.1 0.79 -0.8
2,189,109 + Xcc-8004.2237.1 0.79 +0.5
2,189,171 + Xcc-8004.2237.1 0.89 -1.8
2,189,172 - Xcc-8004.2237.1 0.89 -0.7
2,189,172 - Xcc-8004.2237.1 0.89 +0.2
2,189,172 - Xcc-8004.2237.1 0.89 +0.0
2,189,205 + -2.7
2,189,206 - -0.7
2,189,206 - +0.8
2,189,301 - -0.4
2,189,364 + -0.9
2,189,365 - -0.8
2,189,436 - -1.1
2,189,448 - -0.4
2,189,541 + -0.9
2,189,541 + -0.4
2,189,541 + -0.2
2,189,542 - +1.9
2,189,542 - +0.1
2,189,542 - -2.0
2,189,624 + -1.6
2,189,666 + Xcc-8004.2238.1 0.11 +0.4
2,189,666 + Xcc-8004.2238.1 0.11 +0.8
2,189,666 + Xcc-8004.2238.1 0.11 -0.7
2,189,666 + Xcc-8004.2238.1 0.11 +1.0
2,189,666 + Xcc-8004.2238.1 0.11 +1.4
2,189,667 - Xcc-8004.2238.1 0.11 +1.5
2,189,667 - Xcc-8004.2238.1 0.11 +0.4
2,189,667 - Xcc-8004.2238.1 0.11 +0.4
2,189,667 - Xcc-8004.2238.1 0.11 -2.0
2,189,667 - Xcc-8004.2238.1 0.11 -0.4
2,189,667 - Xcc-8004.2238.1 0.11 -0.9
2,189,723 + Xcc-8004.2238.1 0.14 +2.2
2,189,724 - Xcc-8004.2238.1 0.15 +0.8
2,189,804 + Xcc-8004.2238.1 0.19 +0.6
2,189,804 + Xcc-8004.2238.1 0.19 -3.6
2,189,804 + Xcc-8004.2238.1 0.19 +0.2
2,189,804 + Xcc-8004.2238.1 0.19 -0.1
2,189,804 + Xcc-8004.2238.1 0.19 -0.3
2,189,804 + Xcc-8004.2238.1 0.19 +1.0
2,189,805 - Xcc-8004.2238.1 0.19 +0.4
2,189,805 - Xcc-8004.2238.1 0.19 -1.1
2,189,805 - Xcc-8004.2238.1 0.19 -1.8
2,189,805 - Xcc-8004.2238.1 0.19 -0.6
2,189,825 + Xcc-8004.2238.1 0.20 +0.5
2,189,825 + Xcc-8004.2238.1 0.20 -0.6
2,189,825 + Xcc-8004.2238.1 0.20 -0.5
2,189,825 + Xcc-8004.2238.1 0.20 -0.2
2,189,826 - Xcc-8004.2238.1 0.20 +0.5
2,189,826 - Xcc-8004.2238.1 0.20 +0.9
2,189,826 - Xcc-8004.2238.1 0.20 -2.0
2,189,826 - Xcc-8004.2238.1 0.20 -1.1
2,189,826 - Xcc-8004.2238.1 0.20 -0.8
2,189,826 - Xcc-8004.2238.1 0.20 -2.0
2,189,906 + Xcc-8004.2238.1 0.25 +0.8
2,189,906 + Xcc-8004.2238.1 0.25 +1.5
2,189,906 + Xcc-8004.2238.1 0.25 +0.9
2,189,906 + Xcc-8004.2238.1 0.25 +0.4
2,189,907 - Xcc-8004.2238.1 0.25 -0.0
2,189,907 - Xcc-8004.2238.1 0.25 +1.6
2,190,127 + Xcc-8004.2238.1 0.38 +1.0
2,190,127 + Xcc-8004.2238.1 0.38 +1.6
2,190,127 + Xcc-8004.2238.1 0.38 +1.3
2,190,127 + Xcc-8004.2238.1 0.38 +0.2
2,190,127 + Xcc-8004.2238.1 0.38 -1.4
2,190,128 - Xcc-8004.2238.1 0.38 -0.3
2,190,128 - Xcc-8004.2238.1 0.38 +0.3
2,190,128 - Xcc-8004.2238.1 0.38 -0.2
2,190,128 - Xcc-8004.2238.1 0.38 +1.0
2,190,331 - Xcc-8004.2238.1 0.50 -1.3
2,190,626 + Xcc-8004.2238.1 0.67 -0.6
2,190,626 + Xcc-8004.2238.1 0.67 -0.8
2,190,627 - Xcc-8004.2238.1 0.67 -1.3
2,190,855 + Xcc-8004.2238.1 0.80 -0.2
2,190,918 + Xcc-8004.2238.1 0.84 +0.4
2,191,038 + -0.4
2,191,061 - +2.3
2,191,148 + -0.9
2,191,148 + -0.5
2,191,149 - -1.2
2,191,259 + Xcc-8004.2239.1 0.11 -1.6
2,191,259 + Xcc-8004.2239.1 0.11 +0.5
2,191,259 + Xcc-8004.2239.1 0.11 +0.8
2,191,328 + Xcc-8004.2239.1 0.24 -1.0
2,191,369 - Xcc-8004.2239.1 0.32 +1.0
2,192,059 + Xcc-8004.2240.1 0.27 +1.1
2,192,059 + Xcc-8004.2240.1 0.27 -0.6
2,192,059 + Xcc-8004.2240.1 0.27 -0.3
2,192,060 - Xcc-8004.2240.1 0.27 +1.6
2,192,060 - Xcc-8004.2240.1 0.27 -0.2
2,192,060 - Xcc-8004.2240.1 0.27 +0.4

Or see this region's nucleotide sequence