Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2194.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,140,017	+		Xcc-8004.2193.1	0.65	-0.5
2,140,017	+		Xcc-8004.2193.1	0.65	-0.7
2,140,017	+		Xcc-8004.2193.1	0.65	+0.7
2,140,017	+		Xcc-8004.2193.1	0.65	-2.0
2,140,017	+		Xcc-8004.2193.1	0.65	-1.5
2,140,017	+		Xcc-8004.2193.1	0.65	-0.3
2,140,017	+		Xcc-8004.2193.1	0.65	+0.4
2,140,018	-		Xcc-8004.2193.1	0.65	+1.2
2,140,018	-		Xcc-8004.2193.1	0.65	+0.3
2,140,018	-		Xcc-8004.2193.1	0.65	+0.5
2,140,018	-		Xcc-8004.2193.1	0.65	+0.9
2,140,018	-		Xcc-8004.2193.1	0.65	-1.3
2,140,018	-		Xcc-8004.2193.1	0.65	-0.3
2,140,018	-		Xcc-8004.2193.1	0.65	-0.6
2,140,018	-		Xcc-8004.2193.1	0.65	-1.0
2,140,018	-		Xcc-8004.2193.1	0.65	-1.6
2,140,018	-		Xcc-8004.2193.1	0.65	+0.3
2,140,018	-		Xcc-8004.2193.1	0.65	-0.8
2,140,018	-		Xcc-8004.2193.1	0.65	-2.6
2,140,018	-		Xcc-8004.2193.1	0.65	-1.6
2,140,051	-		Xcc-8004.2193.1	0.67	-1.2
2,140,051	-		Xcc-8004.2193.1	0.67	-0.1
2,140,051	-		Xcc-8004.2193.1	0.67	-0.5
2,140,128	+		Xcc-8004.2193.1	0.71	-0.0
2,140,128	+		Xcc-8004.2193.1	0.71	-0.7
2,140,128	+		Xcc-8004.2193.1	0.71	-1.0
2,140,128	+		Xcc-8004.2193.1	0.71	+0.3
2,140,128	+		Xcc-8004.2193.1	0.71	+1.2
2,140,128	+		Xcc-8004.2193.1	0.71	-0.2
2,140,128	+		Xcc-8004.2193.1	0.71	+0.7
2,140,129	-		Xcc-8004.2193.1	0.71	-1.5
2,140,129	-		Xcc-8004.2193.1	0.71	-2.0
2,140,129	-		Xcc-8004.2193.1	0.71	-1.7
2,140,129	-		Xcc-8004.2193.1	0.71	+1.5
2,140,129	-		Xcc-8004.2193.1	0.71	-0.6
2,140,129	-		Xcc-8004.2193.1	0.71	+0.3
2,140,129	-		Xcc-8004.2193.1	0.71	+1.3
2,140,129	-		Xcc-8004.2193.1	0.71	-0.8
2,140,129	-		Xcc-8004.2193.1	0.71	-1.2
2,140,227	-		Xcc-8004.2193.1	0.77	-1.0
2,140,260	+		Xcc-8004.2193.1	0.79	-0.7
2,140,260	+		Xcc-8004.2193.1	0.79	-1.7
2,140,260	+		Xcc-8004.2193.1	0.79	-0.8
2,140,260	+		Xcc-8004.2193.1	0.79	-0.6
2,140,260	+		Xcc-8004.2193.1	0.79	-1.9
2,140,261	-		Xcc-8004.2193.1	0.79	-3.2
2,140,261	-		Xcc-8004.2193.1	0.79	-0.3
2,140,261	-		Xcc-8004.2193.1	0.79	+0.6
2,140,261	-		Xcc-8004.2193.1	0.79	+1.4
2,140,273	-		Xcc-8004.2193.1	0.80	-0.7
2,140,308	+		Xcc-8004.2193.1	0.82	-0.7
2,140,308	+		Xcc-8004.2193.1	0.82	+1.5
2,140,308	+		Xcc-8004.2193.1	0.82	+0.7
2,140,308	+		Xcc-8004.2193.1	0.82	+0.2
2,140,308	+		Xcc-8004.2193.1	0.82	+0.3
2,140,309	-		Xcc-8004.2193.1	0.82	+0.3
2,140,309	-		Xcc-8004.2193.1	0.82	+1.2
2,140,309	-		Xcc-8004.2193.1	0.82	-0.0
2,140,309	-		Xcc-8004.2193.1	0.82	-0.6
2,140,309	-		Xcc-8004.2193.1	0.82	+0.4
2,140,309	-		Xcc-8004.2193.1	0.82	-1.9
2,140,323	+		Xcc-8004.2193.1	0.83	-1.0
2,140,323	+		Xcc-8004.2193.1	0.83	-0.6
2,140,323	+		Xcc-8004.2193.1	0.83	+0.8
2,140,323	+		Xcc-8004.2193.1	0.83	+0.5
2,140,323	+		Xcc-8004.2193.1	0.83	+0.6
2,140,323	+		Xcc-8004.2193.1	0.83	+0.0
2,140,323	+		Xcc-8004.2193.1	0.83	+0.3
2,140,323	+		Xcc-8004.2193.1	0.83	+0.9
2,140,323	+		Xcc-8004.2193.1	0.83	-1.3
2,140,323	+		Xcc-8004.2193.1	0.83	-1.2
2,140,323	+		Xcc-8004.2193.1	0.83	-1.4
2,140,323	+		Xcc-8004.2193.1	0.83	+0.3
2,140,323	+		Xcc-8004.2193.1	0.83	-0.2
2,140,323	+		Xcc-8004.2193.1	0.83	+1.1
2,140,323	+		Xcc-8004.2193.1	0.83	-1.2
2,140,323	+		Xcc-8004.2193.1	0.83	+0.5
2,140,323	+		Xcc-8004.2193.1	0.83	+1.0
2,140,323	+		Xcc-8004.2193.1	0.83	+0.8
2,140,324	-		Xcc-8004.2193.1	0.83	-1.5
2,140,324	-		Xcc-8004.2193.1	0.83	+0.5
2,140,324	-		Xcc-8004.2193.1	0.83	-0.8
2,140,324	-		Xcc-8004.2193.1	0.83	-0.1
2,140,324	-		Xcc-8004.2193.1	0.83	-0.2
2,140,324	-		Xcc-8004.2193.1	0.83	+0.1
2,140,324	-		Xcc-8004.2193.1	0.83	-0.5
2,140,324	-		Xcc-8004.2193.1	0.83	+0.9
2,140,324	-		Xcc-8004.2193.1	0.83	-0.4
2,140,324	-		Xcc-8004.2193.1	0.83	+1.7
2,140,324	-		Xcc-8004.2193.1	0.83	-0.7
2,140,324	-		Xcc-8004.2193.1	0.83	-0.4
2,140,324	-		Xcc-8004.2193.1	0.83	-1.1
2,140,324	-		Xcc-8004.2193.1	0.83	-1.1
2,140,324	-		Xcc-8004.2193.1	0.83	-1.8
2,140,324	-		Xcc-8004.2193.1	0.83	-1.6
2,140,324	-		Xcc-8004.2193.1	0.83	-1.3
2,140,324	-		Xcc-8004.2193.1	0.83	-0.3
2,140,324	-		Xcc-8004.2193.1	0.83	+0.4
2,140,324	-		Xcc-8004.2193.1	0.83	-1.7
2,140,324	-		Xcc-8004.2193.1	0.83	+0.4
2,140,324	-		Xcc-8004.2193.1	0.83	-1.0
2,140,324	-		Xcc-8004.2193.1	0.83	+1.0
2,140,740	+		Xcc-8004.2194.1	0.15	-0.2
2,140,740	+		Xcc-8004.2194.1	0.15	-0.4
2,140,740	+		Xcc-8004.2194.1	0.15	-1.5
2,140,740	+		Xcc-8004.2194.1	0.15	+0.1
2,140,740	+		Xcc-8004.2194.1	0.15	-1.5
2,140,740	+		Xcc-8004.2194.1	0.15	+1.0
2,140,740	+		Xcc-8004.2194.1	0.15	-1.9
2,140,740	+		Xcc-8004.2194.1	0.15	+1.1
2,140,740	+		Xcc-8004.2194.1	0.15	-0.8
2,140,741	-		Xcc-8004.2194.1	0.15	+0.4
2,140,741	-		Xcc-8004.2194.1	0.15	-2.2
2,141,177	+		Xcc-8004.2194.1	0.67	-1.5
2,141,178	-		Xcc-8004.2194.1	0.67	-0.6
2,141,178	-		Xcc-8004.2194.1	0.67	-0.7
2,141,178	-		Xcc-8004.2194.1	0.67	-0.6
2,141,266	-		Xcc-8004.2194.1	0.77	-0.9
2,141,406	+				-1.2
2,141,406	+				+0.5
2,141,406	+				+0.0
2,141,407	-				+0.2
2,141,407	-				-0.7
2,141,407	-				+1.7
2,141,407	-				+0.7
2,141,480	+				-2.7
2,141,480	+				-0.9
2,141,480	+				+1.4
2,141,481	-				-0.8
2,141,760	-		Xcc-8004.2195.1	0.13	-1.3
2,141,822	+		Xcc-8004.2195.1	0.16	-1.0
2,141,823	-		Xcc-8004.2195.1	0.16	-0.4
2,141,823	-		Xcc-8004.2195.1	0.16	+0.8
2,141,906	+		Xcc-8004.2195.1	0.19	-0.6
2,141,906	+		Xcc-8004.2195.1	0.19	-0.0
2,141,907	-		Xcc-8004.2195.1	0.19	+0.4
2,141,945	+		Xcc-8004.2195.1	0.21	-0.7
2,141,945	+		Xcc-8004.2195.1	0.21	+0.5
2,141,945	+		Xcc-8004.2195.1	0.21	+0.2
2,141,946	-		Xcc-8004.2195.1	0.21	+0.7
2,142,055	+		Xcc-8004.2195.1	0.26	+1.1
2,142,055	+		Xcc-8004.2195.1	0.26	-0.8
2,142,056	-		Xcc-8004.2195.1	0.26	+0.4
2,142,056	-		Xcc-8004.2195.1	0.26	+0.3