Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2176.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,109,119	-				-0.9
2,109,119	-				+1.2
2,109,119	-				-1.2
2,109,144	+				+0.5
2,109,144	+				+1.1
2,109,145	-				-0.3
2,109,145	-				-2.3
2,109,145	-				+1.1
2,109,145	-				+1.1
2,109,145	-				-1.6
2,109,211	+				+1.0
2,109,552	+		Xcc-8004.2175.1	0.41	-0.1
2,109,552	+		Xcc-8004.2175.1	0.41	+1.1
2,109,552	+		Xcc-8004.2175.1	0.41	+0.9
2,109,552	+		Xcc-8004.2175.1	0.41	+0.6
2,109,553	-		Xcc-8004.2175.1	0.42	+0.7
2,110,451	+		Xcc-8004.2176.1	0.14	+0.2
2,110,451	+		Xcc-8004.2176.1	0.14	-0.3
2,110,451	+		Xcc-8004.2176.1	0.14	-1.1
2,110,451	+		Xcc-8004.2176.1	0.14	-1.5
2,110,451	+		Xcc-8004.2176.1	0.14	+1.2
2,110,451	+		Xcc-8004.2176.1	0.14	-0.8
2,110,451	+		Xcc-8004.2176.1	0.14	+0.7
2,110,451	+		Xcc-8004.2176.1	0.14	+1.2
2,110,452	-		Xcc-8004.2176.1	0.14	-0.6
2,110,452	-		Xcc-8004.2176.1	0.14	+0.4
2,110,452	-		Xcc-8004.2176.1	0.14	-0.0
2,110,452	-		Xcc-8004.2176.1	0.14	-2.7
2,110,452	-		Xcc-8004.2176.1	0.14	+1.5
2,110,452	-		Xcc-8004.2176.1	0.14	-1.3
2,110,679	+		Xcc-8004.2176.1	0.23	+0.7
2,110,679	+		Xcc-8004.2176.1	0.23	-0.4
2,110,680	-		Xcc-8004.2176.1	0.23	-1.4
2,110,862	+		Xcc-8004.2176.1	0.30	-2.6
2,110,862	+		Xcc-8004.2176.1	0.30	-0.1
2,110,862	+		Xcc-8004.2176.1	0.30	-0.1
2,110,862	+		Xcc-8004.2176.1	0.30	-0.2
2,110,862	+		Xcc-8004.2176.1	0.30	+1.6
2,110,862	+		Xcc-8004.2176.1	0.30	-0.3
2,110,862	+		Xcc-8004.2176.1	0.30	+1.2
2,110,862	+		Xcc-8004.2176.1	0.30	-0.7
2,110,862	+		Xcc-8004.2176.1	0.30	+1.2
2,110,862	+		Xcc-8004.2176.1	0.30	+1.0
2,110,862	+		Xcc-8004.2176.1	0.30	-0.1
2,110,862	+		Xcc-8004.2176.1	0.30	+0.4
2,110,862	+		Xcc-8004.2176.1	0.30	+1.2
2,110,862	+		Xcc-8004.2176.1	0.30	-0.7
2,110,862	+		Xcc-8004.2176.1	0.30	+0.4
2,110,862	+		Xcc-8004.2176.1	0.30	+1.5
2,110,862	+		Xcc-8004.2176.1	0.30	-0.5
2,110,862	+		Xcc-8004.2176.1	0.30	-0.8
2,110,863	-		Xcc-8004.2176.1	0.30	-1.8
2,110,863	-		Xcc-8004.2176.1	0.30	+1.2
2,110,863	-		Xcc-8004.2176.1	0.30	-1.2
2,110,863	-		Xcc-8004.2176.1	0.30	-1.4
2,110,863	-		Xcc-8004.2176.1	0.30	-0.3
2,110,863	-		Xcc-8004.2176.1	0.30	+1.0
2,110,863	-		Xcc-8004.2176.1	0.30	+0.8
2,110,863	-		Xcc-8004.2176.1	0.30	-1.3
2,110,863	-		Xcc-8004.2176.1	0.30	-0.3
2,110,863	-		Xcc-8004.2176.1	0.30	-1.1
2,110,863	-		Xcc-8004.2176.1	0.30	+1.5
2,110,863	-		Xcc-8004.2176.1	0.30	+0.8
2,110,863	-		Xcc-8004.2176.1	0.30	+0.6
2,110,863	-		Xcc-8004.2176.1	0.30	-0.3
2,110,863	-		Xcc-8004.2176.1	0.30	+0.8
2,110,863	-		Xcc-8004.2176.1	0.30	+0.2
2,110,871	+		Xcc-8004.2176.1	0.30	-1.1
2,110,871	+		Xcc-8004.2176.1	0.30	+1.2
2,111,085	+		Xcc-8004.2176.1	0.39	-0.5
2,111,129	+		Xcc-8004.2176.1	0.41	-0.2
2,111,129	+		Xcc-8004.2176.1	0.41	+2.0
2,111,129	+		Xcc-8004.2176.1	0.41	-0.4
2,111,129	+		Xcc-8004.2176.1	0.41	-0.5
2,111,129	+		Xcc-8004.2176.1	0.41	+2.2
2,111,129	+		Xcc-8004.2176.1	0.41	-1.1
2,111,129	+		Xcc-8004.2176.1	0.41	-1.2
2,111,130	-		Xcc-8004.2176.1	0.41	+1.3
2,111,130	-		Xcc-8004.2176.1	0.41	+0.0
2,111,961	+		Xcc-8004.2176.1	0.74	+1.1
2,111,961	+		Xcc-8004.2176.1	0.74	+1.1
2,111,962	-		Xcc-8004.2176.1	0.74	-2.2
2,111,962	-		Xcc-8004.2176.1	0.74	-0.2
2,111,962	-		Xcc-8004.2176.1	0.74	-0.1
2,112,116	+		Xcc-8004.2176.1	0.80	+0.6
2,112,456	+				-1.6
2,112,456	+				+1.0
2,112,457	-				+0.9
2,112,658	+				+0.2
2,112,659	-				-0.9
2,112,712	+				+1.2
2,112,712	+				-2.0
2,112,712	+				+1.6
2,112,713	-				+0.8
2,112,713	-				+0.2
2,112,713	-				-2.3
2,112,713	-				-0.7
2,112,713	-				-0.8
2,112,713	-				+0.4
2,112,713	-				-0.6
2,112,726	+				+1.9
2,112,726	+				+0.2
2,112,726	+				+0.6
2,112,726	+				-3.1
2,112,766	+				-0.7
2,112,792	+				-2.4
2,112,793	-				-1.1
2,112,793	-				-2.0
2,112,793	-				-0.9
2,113,003	+		Xcc-8004.2177.1	0.22	-0.4
2,113,003	+		Xcc-8004.2177.1	0.22	+0.9
2,113,003	+		Xcc-8004.2177.1	0.22	+0.2
2,113,003	+		Xcc-8004.2177.1	0.22	+1.6
2,113,003	+		Xcc-8004.2177.1	0.22	-0.5
2,113,004	-		Xcc-8004.2177.1	0.22	-0.3
2,113,004	-		Xcc-8004.2177.1	0.22	+1.2
2,113,004	-		Xcc-8004.2177.1	0.22	+0.7
2,113,004	-		Xcc-8004.2177.1	0.22	-2.5
2,113,053	+		Xcc-8004.2177.1	0.27	+1.3
2,113,053	+		Xcc-8004.2177.1	0.27	+1.1
2,113,074	+		Xcc-8004.2177.1	0.29	-2.2
2,113,074	+		Xcc-8004.2177.1	0.29	+0.1
2,113,074	+		Xcc-8004.2177.1	0.29	-0.7
2,113,075	-		Xcc-8004.2177.1	0.29	+1.0
2,113,105	+		Xcc-8004.2177.1	0.32	+0.7
2,113,105	+		Xcc-8004.2177.1	0.32	-0.7
2,113,105	+		Xcc-8004.2177.1	0.32	+0.8
2,113,105	+		Xcc-8004.2177.1	0.32	-1.1
2,113,105	+		Xcc-8004.2177.1	0.32	+1.1
2,113,106	-		Xcc-8004.2177.1	0.32	-0.7
2,113,106	-		Xcc-8004.2177.1	0.32	-1.2
2,113,106	-		Xcc-8004.2177.1	0.32	-1.5
2,113,106	-		Xcc-8004.2177.1	0.32	-0.1
2,113,106	-		Xcc-8004.2177.1	0.32	-0.8
2,113,191	-		Xcc-8004.2177.1	0.41	-1.0
2,113,198	+		Xcc-8004.2177.1	0.41	+0.7
2,113,199	-		Xcc-8004.2177.1	0.41	+1.6
2,113,199	-		Xcc-8004.2177.1	0.41	-1.4
2,113,372	+		Xcc-8004.2177.1	0.59	+0.2
2,113,412	-		Xcc-8004.2177.1	0.63	+0.1
2,113,503	+		Xcc-8004.2177.1	0.72	-0.2
2,113,503	+		Xcc-8004.2177.1	0.72	-0.7
2,113,504	-		Xcc-8004.2177.1	0.72	+1.4
2,113,504	-		Xcc-8004.2177.1	0.72	-1.5
2,113,542	+		Xcc-8004.2177.1	0.76	-2.0
2,113,543	-		Xcc-8004.2177.1	0.76	+0.5