Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2137.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2136.1 and Xcc-8004.2137.1 overlap by 1 nucleotidesXcc-8004.2137.1 and Xcc-8004.2138.1 are separated by 146 nucleotidesXcc-8004.2138.1 and Xcc-8004.2139.1 are separated by 55 nucleotides Xcc-8004.2136.1: Xcc-8004.2136.1 - Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster, at 2,050,570 to 2,052,906 Xcc-8004.2136.1 Xcc-8004.2137.1: Xcc-8004.2137.1 - Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster, at 2,052,906 to 2,054,537 Xcc-8004.2137.1 Xcc-8004.2138.1: Xcc-8004.2138.1 - FIG01211780: hypothetical protein, at 2,054,684 to 2,054,980 Xcc-8004.2138.1 Xcc-8004.2139.1: Xcc-8004.2139.1 - FIG01213750: hypothetical protein, at 2,055,036 to 2,056,262 Xcc-8004.2139.1 Position (kb) 2052 2053 2054 2055Strain fitness (log2 ratio) -2 -1 0 1 2at 2051.950 kb on + strand, within Xcc-8004.2136.1at 2051.962 kb on + strand, within Xcc-8004.2136.1at 2051.962 kb on + strand, within Xcc-8004.2136.1at 2051.963 kb on - strand, within Xcc-8004.2136.1at 2052.053 kb on + strand, within Xcc-8004.2136.1at 2052.054 kb on - strand, within Xcc-8004.2136.1at 2052.054 kb on - strand, within Xcc-8004.2136.1at 2052.149 kb on - strand, within Xcc-8004.2136.1at 2052.433 kb on + strand, within Xcc-8004.2136.1at 2052.433 kb on + strand, within Xcc-8004.2136.1at 2052.434 kb on - strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.457 kb on + strand, within Xcc-8004.2136.1at 2052.458 kb on - strand, within Xcc-8004.2136.1at 2052.458 kb on - strand, within Xcc-8004.2136.1at 2052.458 kb on - strand, within Xcc-8004.2136.1at 2052.458 kb on - strand, within Xcc-8004.2136.1at 2052.458 kb on - strand, within Xcc-8004.2136.1at 2052.524 kb on + strand, within Xcc-8004.2136.1at 2052.525 kb on - strand, within Xcc-8004.2136.1at 2052.525 kb on - strand, within Xcc-8004.2136.1at 2052.548 kb on - strand, within Xcc-8004.2136.1at 2052.613 kb on + strand, within Xcc-8004.2136.1at 2052.614 kb on - strand, within Xcc-8004.2136.1at 2052.614 kb on - strand, within Xcc-8004.2136.1at 2052.815 kb on - strandat 2052.815 kb on - strandat 2052.815 kb on - strandat 2052.815 kb on - strandat 2053.069 kb on - strandat 2053.179 kb on + strand, within Xcc-8004.2137.1at 2053.180 kb on - strand, within Xcc-8004.2137.1at 2053.314 kb on + strand, within Xcc-8004.2137.1at 2053.315 kb on - strand, within Xcc-8004.2137.1at 2053.346 kb on + strand, within Xcc-8004.2137.1at 2053.347 kb on - strand, within Xcc-8004.2137.1at 2053.347 kb on - strand, within Xcc-8004.2137.1at 2053.347 kb on - strand, within Xcc-8004.2137.1at 2053.351 kb on - strand, within Xcc-8004.2137.1at 2053.351 kb on - strand, within Xcc-8004.2137.1at 2053.358 kb on + strand, within Xcc-8004.2137.1at 2053.661 kb on + strand, within Xcc-8004.2137.1at 2053.662 kb on - strand, within Xcc-8004.2137.1at 2053.683 kb on + strand, within Xcc-8004.2137.1at 2053.683 kb on + strand, within Xcc-8004.2137.1at 2053.719 kb on + strand, within Xcc-8004.2137.1at 2053.720 kb on - strand, within Xcc-8004.2137.1at 2053.720 kb on - strand, within Xcc-8004.2137.1at 2053.735 kb on - strand, within Xcc-8004.2137.1at 2053.735 kb on - strand, within Xcc-8004.2137.1at 2053.770 kb on + strand, within Xcc-8004.2137.1at 2053.869 kb on + strand, within Xcc-8004.2137.1at 2053.869 kb on + strand, within Xcc-8004.2137.1at 2053.869 kb on + strand, within Xcc-8004.2137.1at 2053.870 kb on - strand, within Xcc-8004.2137.1at 2053.890 kb on + strand, within Xcc-8004.2137.1at 2053.890 kb on + strand, within Xcc-8004.2137.1at 2053.891 kb on - strand, within Xcc-8004.2137.1at 2053.975 kb on - strand, within Xcc-8004.2137.1at 2054.532 kb on + strandat 2054.533 kb on - strandat 2055.077 kb on + strandat 2055.123 kb on - strandat 2055.123 kb on - strandat 2055.241 kb on + strand, within Xcc-8004.2139.1at 2055.328 kb on + strand, within Xcc-8004.2139.1at 2055.330 kb on + strand, within Xcc-8004.2139.1at 2055.330 kb on + strand, within Xcc-8004.2139.1at 2055.330 kb on + strand, within Xcc-8004.2139.1at 2055.331 kb on - strand, within Xcc-8004.2139.1at 2055.331 kb on - strand, within Xcc-8004.2139.1at 2055.331 kb on - strand, within Xcc-8004.2139.1at 2055.331 kb on - strand, within Xcc-8004.2139.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,051,950 + Xcc-8004.2136.1 0.59 -1.0
2,051,962 + Xcc-8004.2136.1 0.60 -0.6
2,051,962 + Xcc-8004.2136.1 0.60 -0.9
2,051,963 - Xcc-8004.2136.1 0.60 +0.4
2,052,053 + Xcc-8004.2136.1 0.63 -0.5
2,052,054 - Xcc-8004.2136.1 0.64 +1.4
2,052,054 - Xcc-8004.2136.1 0.64 -2.3
2,052,149 - Xcc-8004.2136.1 0.68 +0.5
2,052,433 + Xcc-8004.2136.1 0.80 -0.6
2,052,433 + Xcc-8004.2136.1 0.80 +1.3
2,052,434 - Xcc-8004.2136.1 0.80 -1.1
2,052,457 + Xcc-8004.2136.1 0.81 -2.2
2,052,457 + Xcc-8004.2136.1 0.81 -1.0
2,052,457 + Xcc-8004.2136.1 0.81 -0.5
2,052,457 + Xcc-8004.2136.1 0.81 +0.9
2,052,457 + Xcc-8004.2136.1 0.81 -0.7
2,052,457 + Xcc-8004.2136.1 0.81 -0.6
2,052,457 + Xcc-8004.2136.1 0.81 +0.5
2,052,458 - Xcc-8004.2136.1 0.81 -1.5
2,052,458 - Xcc-8004.2136.1 0.81 -0.5
2,052,458 - Xcc-8004.2136.1 0.81 -2.6
2,052,458 - Xcc-8004.2136.1 0.81 -1.4
2,052,458 - Xcc-8004.2136.1 0.81 -1.2
2,052,524 + Xcc-8004.2136.1 0.84 +0.2
2,052,525 - Xcc-8004.2136.1 0.84 -0.8
2,052,525 - Xcc-8004.2136.1 0.84 +0.9
2,052,548 - Xcc-8004.2136.1 0.85 -0.5
2,052,613 + Xcc-8004.2136.1 0.87 -1.0
2,052,614 - Xcc-8004.2136.1 0.87 -0.4
2,052,614 - Xcc-8004.2136.1 0.87 -0.1
2,052,815 - -0.7
2,052,815 - +0.8
2,052,815 - -0.4
2,052,815 - -0.8
2,053,069 - +0.6
2,053,179 + Xcc-8004.2137.1 0.17 -1.2
2,053,180 - Xcc-8004.2137.1 0.17 +0.6
2,053,314 + Xcc-8004.2137.1 0.25 -1.8
2,053,315 - Xcc-8004.2137.1 0.25 -1.1
2,053,346 + Xcc-8004.2137.1 0.27 -0.4
2,053,347 - Xcc-8004.2137.1 0.27 -0.3
2,053,347 - Xcc-8004.2137.1 0.27 -1.0
2,053,347 - Xcc-8004.2137.1 0.27 -1.3
2,053,351 - Xcc-8004.2137.1 0.27 -1.0
2,053,351 - Xcc-8004.2137.1 0.27 +2.1
2,053,358 + Xcc-8004.2137.1 0.28 -0.3
2,053,661 + Xcc-8004.2137.1 0.46 -1.3
2,053,662 - Xcc-8004.2137.1 0.46 +0.4
2,053,683 + Xcc-8004.2137.1 0.48 -1.1
2,053,683 + Xcc-8004.2137.1 0.48 +1.6
2,053,719 + Xcc-8004.2137.1 0.50 -1.0
2,053,720 - Xcc-8004.2137.1 0.50 +0.4
2,053,720 - Xcc-8004.2137.1 0.50 +1.2
2,053,735 - Xcc-8004.2137.1 0.51 -0.9
2,053,735 - Xcc-8004.2137.1 0.51 -1.8
2,053,770 + Xcc-8004.2137.1 0.53 -0.4
2,053,869 + Xcc-8004.2137.1 0.59 -0.6
2,053,869 + Xcc-8004.2137.1 0.59 -0.6
2,053,869 + Xcc-8004.2137.1 0.59 +0.2
2,053,870 - Xcc-8004.2137.1 0.59 -2.5
2,053,890 + Xcc-8004.2137.1 0.60 +0.4
2,053,890 + Xcc-8004.2137.1 0.60 -1.1
2,053,891 - Xcc-8004.2137.1 0.60 +0.0
2,053,975 - Xcc-8004.2137.1 0.66 -0.0
2,054,532 + -1.3
2,054,533 - +1.5
2,055,077 + +0.0
2,055,123 - +2.3
2,055,123 - -1.3
2,055,241 + Xcc-8004.2139.1 0.17 +0.7
2,055,328 + Xcc-8004.2139.1 0.24 +2.7
2,055,330 + Xcc-8004.2139.1 0.24 -0.0
2,055,330 + Xcc-8004.2139.1 0.24 -0.8
2,055,330 + Xcc-8004.2139.1 0.24 -2.0
2,055,331 - Xcc-8004.2139.1 0.24 -0.3
2,055,331 - Xcc-8004.2139.1 0.24 -0.4
2,055,331 - Xcc-8004.2139.1 0.24 +0.0
2,055,331 - Xcc-8004.2139.1 0.24 -0.8

Or see this region's nucleotide sequence