Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2136.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,049,642	+		Xcc-8004.2134.1	0.41	+0.0
2,049,643	-		Xcc-8004.2134.1	0.41	-1.1
2,049,702	-		Xcc-8004.2134.1	0.45	+0.3
2,049,747	+		Xcc-8004.2134.1	0.47	+1.3
2,049,747	+		Xcc-8004.2134.1	0.47	+0.1
2,049,748	-		Xcc-8004.2134.1	0.48	-0.5
2,049,748	-		Xcc-8004.2134.1	0.48	-1.2
2,049,929	+		Xcc-8004.2134.1	0.59	+2.7
2,049,929	+		Xcc-8004.2134.1	0.59	+0.4
2,049,929	+		Xcc-8004.2134.1	0.59	+0.7
2,049,930	-		Xcc-8004.2134.1	0.59	+1.0
2,049,930	-		Xcc-8004.2134.1	0.59	-0.0
2,049,933	+		Xcc-8004.2134.1	0.59	+0.2
2,049,933	+		Xcc-8004.2134.1	0.59	+2.7
2,049,934	-		Xcc-8004.2134.1	0.59	-1.8
2,049,934	-		Xcc-8004.2134.1	0.59	+1.0
2,049,934	-		Xcc-8004.2134.1	0.59	-0.4
2,049,961	-		Xcc-8004.2134.1	0.61	+1.3
2,049,961	-		Xcc-8004.2134.1	0.61	+1.4
2,050,134	+		Xcc-8004.2134.1	0.72	+0.1
2,050,135	-		Xcc-8004.2134.1	0.72	-0.8
2,050,260	+		Xcc-8004.2134.1	0.80	+0.4
2,050,260	+		Xcc-8004.2134.1	0.80	-2.1
2,050,261	-		Xcc-8004.2134.1	0.80	+0.2
2,050,323	+		Xcc-8004.2134.1	0.84	+0.8
2,050,323	+		Xcc-8004.2134.1	0.84	+0.5
2,050,324	-		Xcc-8004.2134.1	0.84	-1.5
2,050,512	+				-1.4
2,050,512	+				-1.0
2,050,512	+				+1.4
2,050,512	+				+0.3
2,050,513	-				+0.5
2,050,513	-				+0.7
2,050,513	-				-0.5
2,050,597	+				+1.1
2,050,597	+				+2.0
2,050,598	-				-1.1
2,050,598	-				+1.5
2,050,598	-				+0.8
2,050,682	-				+0.6
2,050,771	+				-1.8
2,050,772	-				-0.3
2,051,014	+		Xcc-8004.2136.1	0.19	-0.9
2,051,224	+		Xcc-8004.2136.1	0.28	+0.6
2,051,225	-		Xcc-8004.2136.1	0.28	-1.1
2,051,275	+		Xcc-8004.2136.1	0.30	-0.7
2,051,276	-		Xcc-8004.2136.1	0.30	-0.2
2,051,283	-		Xcc-8004.2136.1	0.31	+1.5
2,051,704	+		Xcc-8004.2136.1	0.49	-1.6
2,051,705	-		Xcc-8004.2136.1	0.49	+1.1
2,051,705	-		Xcc-8004.2136.1	0.49	-0.8
2,051,849	-		Xcc-8004.2136.1	0.55	-1.9
2,051,860	+		Xcc-8004.2136.1	0.55	+0.3
2,051,860	+		Xcc-8004.2136.1	0.55	-1.1
2,051,950	+		Xcc-8004.2136.1	0.59	-1.0
2,051,962	+		Xcc-8004.2136.1	0.60	-0.6
2,051,962	+		Xcc-8004.2136.1	0.60	-0.9
2,051,963	-		Xcc-8004.2136.1	0.60	+0.4
2,052,053	+		Xcc-8004.2136.1	0.63	-0.5
2,052,054	-		Xcc-8004.2136.1	0.64	+1.4
2,052,054	-		Xcc-8004.2136.1	0.64	-2.3
2,052,149	-		Xcc-8004.2136.1	0.68	+0.5
2,052,433	+		Xcc-8004.2136.1	0.80	-0.6
2,052,433	+		Xcc-8004.2136.1	0.80	+1.3
2,052,434	-		Xcc-8004.2136.1	0.80	-1.1
2,052,457	+		Xcc-8004.2136.1	0.81	-2.2
2,052,457	+		Xcc-8004.2136.1	0.81	-1.0
2,052,457	+		Xcc-8004.2136.1	0.81	-0.5
2,052,457	+		Xcc-8004.2136.1	0.81	+0.9
2,052,457	+		Xcc-8004.2136.1	0.81	-0.7
2,052,457	+		Xcc-8004.2136.1	0.81	-0.6
2,052,457	+		Xcc-8004.2136.1	0.81	+0.5
2,052,458	-		Xcc-8004.2136.1	0.81	-1.5
2,052,458	-		Xcc-8004.2136.1	0.81	-0.5
2,052,458	-		Xcc-8004.2136.1	0.81	-2.6
2,052,458	-		Xcc-8004.2136.1	0.81	-1.4
2,052,458	-		Xcc-8004.2136.1	0.81	-1.2
2,052,524	+		Xcc-8004.2136.1	0.84	+0.2
2,052,525	-		Xcc-8004.2136.1	0.84	-0.8
2,052,525	-		Xcc-8004.2136.1	0.84	+0.9
2,052,548	-		Xcc-8004.2136.1	0.85	-0.5
2,052,613	+		Xcc-8004.2136.1	0.87	-1.0
2,052,614	-		Xcc-8004.2136.1	0.87	-0.4
2,052,614	-		Xcc-8004.2136.1	0.87	-0.1
2,052,815	-				-0.7
2,052,815	-				+0.8
2,052,815	-				-0.4
2,052,815	-				-0.8
2,053,069	-				+0.6
2,053,179	+		Xcc-8004.2137.1	0.17	-1.2
2,053,180	-		Xcc-8004.2137.1	0.17	+0.6
2,053,314	+		Xcc-8004.2137.1	0.25	-1.8
2,053,315	-		Xcc-8004.2137.1	0.25	-1.1
2,053,346	+		Xcc-8004.2137.1	0.27	-0.4
2,053,347	-		Xcc-8004.2137.1	0.27	-0.3
2,053,347	-		Xcc-8004.2137.1	0.27	-1.0
2,053,347	-		Xcc-8004.2137.1	0.27	-1.3
2,053,351	-		Xcc-8004.2137.1	0.27	-1.0
2,053,351	-		Xcc-8004.2137.1	0.27	+2.1
2,053,358	+		Xcc-8004.2137.1	0.28	-0.3
2,053,661	+		Xcc-8004.2137.1	0.46	-1.3
2,053,662	-		Xcc-8004.2137.1	0.46	+0.4
2,053,683	+		Xcc-8004.2137.1	0.48	-1.1
2,053,683	+		Xcc-8004.2137.1	0.48	+1.6
2,053,719	+		Xcc-8004.2137.1	0.50	-1.0
2,053,720	-		Xcc-8004.2137.1	0.50	+0.4
2,053,720	-		Xcc-8004.2137.1	0.50	+1.2
2,053,735	-		Xcc-8004.2137.1	0.51	-0.9
2,053,735	-		Xcc-8004.2137.1	0.51	-1.8
2,053,770	+		Xcc-8004.2137.1	0.53	-0.4
2,053,869	+		Xcc-8004.2137.1	0.59	-0.6
2,053,869	+		Xcc-8004.2137.1	0.59	-0.6
2,053,869	+		Xcc-8004.2137.1	0.59	+0.2
2,053,870	-		Xcc-8004.2137.1	0.59	-2.5
2,053,890	+		Xcc-8004.2137.1	0.60	+0.4
2,053,890	+		Xcc-8004.2137.1	0.60	-1.1
2,053,891	-		Xcc-8004.2137.1	0.60	+0.0