Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2129.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,040,234	-		Xcc-8004.2128.1	0.41	+1.1
2,040,236	+		Xcc-8004.2128.1	0.41	-0.5
2,040,236	+		Xcc-8004.2128.1	0.41	+1.2
2,040,236	+		Xcc-8004.2128.1	0.41	-2.7
2,040,237	-		Xcc-8004.2128.1	0.41	+0.7
2,040,322	+		Xcc-8004.2128.1	0.48	-0.7
2,040,512	+		Xcc-8004.2128.1	0.62	-2.2
2,040,513	-		Xcc-8004.2128.1	0.62	-0.4
2,040,528	-		Xcc-8004.2128.1	0.63	+1.2
2,041,049	+				-1.0
2,041,049	+				-1.1
2,041,050	-				+1.0
2,041,211	-		Xcc-8004.2129.1	0.23	+1.4
2,041,335	+		Xcc-8004.2129.1	0.36	+0.1
2,041,335	+		Xcc-8004.2129.1	0.36	-0.6
2,041,335	+		Xcc-8004.2129.1	0.36	+0.9
2,041,335	+		Xcc-8004.2129.1	0.36	-0.6
2,041,335	+		Xcc-8004.2129.1	0.36	-1.4
2,041,336	-		Xcc-8004.2129.1	0.36	-1.2
2,041,341	+		Xcc-8004.2129.1	0.37	-1.1
2,041,341	+		Xcc-8004.2129.1	0.37	+0.4
2,041,341	+		Xcc-8004.2129.1	0.37	+1.3
2,041,341	+		Xcc-8004.2129.1	0.37	-1.1
2,041,342	-		Xcc-8004.2129.1	0.37	-0.7
2,041,342	-		Xcc-8004.2129.1	0.37	-1.1
2,041,416	+		Xcc-8004.2129.1	0.45	-1.1
2,041,434	+		Xcc-8004.2129.1	0.47	-1.2
2,041,434	+		Xcc-8004.2129.1	0.47	+1.3
2,041,435	-		Xcc-8004.2129.1	0.47	-0.8
2,041,435	-		Xcc-8004.2129.1	0.47	-1.6
2,041,435	-		Xcc-8004.2129.1	0.47	-1.8
2,041,435	-		Xcc-8004.2129.1	0.47	-0.8
2,041,501	+		Xcc-8004.2129.1	0.55	-1.7
2,041,502	-		Xcc-8004.2129.1	0.55	-0.5
2,041,502	-		Xcc-8004.2129.1	0.55	-1.8
2,041,502	-		Xcc-8004.2129.1	0.55	-0.3
2,041,502	-		Xcc-8004.2129.1	0.55	-1.4
2,041,502	-		Xcc-8004.2129.1	0.55	-0.9
2,041,650	+		Xcc-8004.2129.1	0.71	-0.1
2,041,650	+		Xcc-8004.2129.1	0.71	-0.7
2,041,719	+		Xcc-8004.2129.1	0.79	-0.2
2,041,719	+		Xcc-8004.2129.1	0.79	+0.1
2,041,719	+		Xcc-8004.2129.1	0.79	-1.0
2,041,719	+		Xcc-8004.2129.1	0.79	+0.5
2,041,719	+		Xcc-8004.2129.1	0.79	+0.6
2,041,720	-		Xcc-8004.2129.1	0.79	+1.2
2,041,720	-		Xcc-8004.2129.1	0.79	-2.6
2,041,945	+				-2.1
2,041,946	-				+0.0
2,041,946	-				+1.0
2,041,973	+				+0.4
2,041,973	+				-0.3
2,041,973	+				-0.3
2,041,973	+				-0.9
2,041,973	+				-0.4
2,041,973	+				-0.4
2,041,973	+				+1.1
2,041,973	+				+0.3
2,041,974	-				-1.1
2,041,974	-				-0.3
2,041,989	+				-0.4
2,042,081	+				+0.2
2,042,441	+		Xcc-8004.2130.1	0.21	-0.5
2,042,442	-		Xcc-8004.2130.1	0.22	+1.4
2,042,442	-		Xcc-8004.2130.1	0.22	+2.2
2,042,442	-		Xcc-8004.2130.1	0.22	+1.2
2,042,442	-		Xcc-8004.2130.1	0.22	-0.1
2,042,470	+		Xcc-8004.2130.1	0.23	+0.7
2,042,471	-		Xcc-8004.2130.1	0.23	-0.6
2,042,563	-		Xcc-8004.2130.1	0.29	-2.8
2,042,743	+		Xcc-8004.2130.1	0.40	+0.3
2,042,743	+		Xcc-8004.2130.1	0.40	-0.8
2,042,743	+		Xcc-8004.2130.1	0.40	+0.4
2,042,744	-		Xcc-8004.2130.1	0.40	-0.7
2,042,744	-		Xcc-8004.2130.1	0.40	-0.1
2,042,873	-		Xcc-8004.2130.1	0.49	+0.0
2,042,873	-		Xcc-8004.2130.1	0.49	-0.8
2,042,873	-		Xcc-8004.2130.1	0.49	+0.7