Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2126.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,037,543	-		Xcc-8004.2125.1	0.27	-0.8
2,037,648	+		Xcc-8004.2125.1	0.38	+0.0
2,037,648	+		Xcc-8004.2125.1	0.38	+1.2
2,037,649	-		Xcc-8004.2125.1	0.38	-2.6
2,037,732	+		Xcc-8004.2125.1	0.47	+0.7
2,037,732	+		Xcc-8004.2125.1	0.47	+1.2
2,037,732	+		Xcc-8004.2125.1	0.47	-0.7
2,037,732	+		Xcc-8004.2125.1	0.47	+1.2
2,037,733	-		Xcc-8004.2125.1	0.47	-0.5
2,037,733	-		Xcc-8004.2125.1	0.47	-1.5
2,037,845	+		Xcc-8004.2125.1	0.59	-1.0
2,037,845	+		Xcc-8004.2125.1	0.59	-1.2
2,037,845	+		Xcc-8004.2125.1	0.59	-0.1
2,037,846	-		Xcc-8004.2125.1	0.59	-1.2
2,037,846	-		Xcc-8004.2125.1	0.59	-1.1
2,037,916	+		Xcc-8004.2125.1	0.66	+0.2
2,037,917	-		Xcc-8004.2125.1	0.66	-0.3
2,037,989	+		Xcc-8004.2125.1	0.74	-0.9
2,038,116	-		Xcc-8004.2125.1	0.88	+0.1
2,038,317	+				+1.5
2,038,317	+				+1.2
2,038,317	+				-0.1
2,038,317	+				+0.7
2,038,317	+				+0.4
2,038,317	+				-0.7
2,038,357	+		Xcc-8004.2126.1	0.10	-0.8
2,038,357	+		Xcc-8004.2126.1	0.10	-0.2
2,038,358	-		Xcc-8004.2126.1	0.10	-0.3
2,038,358	-		Xcc-8004.2126.1	0.10	+1.3
2,038,529	+		Xcc-8004.2126.1	0.24	+0.6
2,038,529	+		Xcc-8004.2126.1	0.24	-0.0
2,038,537	+		Xcc-8004.2126.1	0.25	-1.4
2,038,708	+		Xcc-8004.2126.1	0.39	+1.0
2,038,709	-		Xcc-8004.2126.1	0.39	+1.4
2,038,777	+		Xcc-8004.2126.1	0.44	+1.2
2,038,778	-		Xcc-8004.2126.1	0.44	+0.0
2,039,041	+		Xcc-8004.2126.1	0.66	-2.3
2,039,042	-		Xcc-8004.2126.1	0.66	-0.1
2,039,042	-		Xcc-8004.2126.1	0.66	+1.0
2,039,042	-		Xcc-8004.2126.1	0.66	-0.8
2,039,137	+		Xcc-8004.2126.1	0.74	-0.7
2,039,203	+		Xcc-8004.2126.1	0.79	-0.1
2,039,203	+		Xcc-8004.2126.1	0.79	+1.1
2,039,203	+		Xcc-8004.2126.1	0.79	-0.3
2,039,203	+		Xcc-8004.2126.1	0.79	+1.6
2,039,204	-		Xcc-8004.2126.1	0.79	+2.2
2,039,204	-		Xcc-8004.2126.1	0.79	+0.7
2,039,204	-		Xcc-8004.2126.1	0.79	+0.3
2,039,281	+		Xcc-8004.2126.1	0.85	-0.4
2,039,422	+				-0.7
2,039,441	+				+1.4
2,039,442	-				-2.1
2,039,476	+				-1.1
2,039,476	+				+1.6
2,039,476	+				-0.8
2,039,476	+				+3.5
2,039,476	+				+0.3
2,039,476	+				+1.4
2,039,476	+				-0.7
2,039,476	+				-0.1
2,039,476	+				+1.4
2,039,476	+				-1.0
2,039,476	+				-0.8
2,039,476	+				+0.6
2,039,476	+				-1.8
2,039,477	-				-0.1
2,039,477	-				-1.3
2,039,477	-				+2.7
2,039,477	-				+1.3
2,039,477	-				-1.5
2,039,477	-				-0.9
2,039,477	-				+0.8
2,039,477	-				-1.6
2,039,691	-				+0.4
2,039,995	+		Xcc-8004.2128.1	0.23	+0.4
2,039,995	+		Xcc-8004.2128.1	0.23	+1.5
2,039,996	-		Xcc-8004.2128.1	0.23	-1.5
2,039,996	-		Xcc-8004.2128.1	0.23	-1.5
2,040,234	-		Xcc-8004.2128.1	0.41	+1.1
2,040,236	+		Xcc-8004.2128.1	0.41	-0.5
2,040,236	+		Xcc-8004.2128.1	0.41	+1.2
2,040,236	+		Xcc-8004.2128.1	0.41	-2.7
2,040,237	-		Xcc-8004.2128.1	0.41	+0.7
2,040,322	+		Xcc-8004.2128.1	0.48	-0.7