Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2079.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,992,754	+				-0.2
1,992,754	+				-0.3
1,992,754	+				-0.9
1,992,754	+				+1.2
1,992,754	+				-1.0
1,992,754	+				+0.4
1,992,754	+				+0.4
1,992,754	+				+1.3
1,992,754	+				+0.8
1,992,754	+				-0.2
1,992,755	-				-0.3
1,992,755	-				+0.7
1,992,755	-				-0.1
1,992,755	-				+1.0
1,992,773	-				-0.8
1,992,773	-				-0.1
1,992,784	-				+0.7
1,992,807	-		Xcc-8004.2074.1	0.15	-0.1
1,992,864	-		Xcc-8004.2074.1	0.31	-1.2
1,992,920	+		Xcc-8004.2074.1	0.46	-1.6
1,992,920	+		Xcc-8004.2074.1	0.46	+0.2
1,992,921	-		Xcc-8004.2074.1	0.46	+0.4
1,992,921	-		Xcc-8004.2074.1	0.46	+0.3
1,992,921	-		Xcc-8004.2074.1	0.46	-1.9
1,992,921	-		Xcc-8004.2074.1	0.46	-0.1
1,992,923	+		Xcc-8004.2074.1	0.47	+0.8
1,992,923	+		Xcc-8004.2074.1	0.47	+0.7
1,992,923	+		Xcc-8004.2074.1	0.47	+0.6
1,992,924	-		Xcc-8004.2074.1	0.47	-0.1
1,992,924	-		Xcc-8004.2074.1	0.47	+1.2
1,992,924	-		Xcc-8004.2074.1	0.47	+0.6
1,992,924	-		Xcc-8004.2074.1	0.47	+1.2
1,992,924	-		Xcc-8004.2074.1	0.47	+0.4
1,992,971	+		Xcc-8004.2074.1	0.61	+0.7
1,992,972	-		Xcc-8004.2074.1	0.61	-1.8
1,992,983	+		Xcc-8004.2074.1	0.64	-0.4
1,993,124	+				+0.0
1,993,124	+				+0.2
1,993,133	+				-0.3
1,993,133	+				-0.3
1,993,135	+				+0.7
1,993,135	+				+0.1
1,993,135	+				-0.6
1,993,323	+				+1.4
1,993,323	+				-0.0
1,993,324	-				+0.0
1,993,324	-				+0.9
1,993,324	-				-2.0
1,993,324	-				-0.7
1,993,324	-				+0.5
1,993,324	-				-0.4
1,993,331	+				+1.0
1,993,332	-				+0.2
1,993,332	-				-0.1
1,993,345	+				-2.5
1,993,360	+				-0.1
1,993,360	+				-1.9
1,993,360	+				-2.3
1,993,360	+				+0.6
1,993,360	+				-0.7
1,993,360	+				-0.1
1,993,360	+				-0.8
1,993,360	+				+1.3
1,993,361	-				+0.7
1,993,361	-				-2.4
1,993,361	-				+0.6
1,993,361	-				-1.0
1,993,361	-				+0.7
1,993,361	-				-1.4
1,993,402	-				+0.9
1,993,402	-				-0.9
1,993,418	-				-0.8
1,993,418	-				+1.0
1,993,427	+				-0.4
1,993,427	+				-0.6
1,993,428	-				+0.8
1,993,428	-				-1.9
1,993,428	-				+1.2
1,993,428	-				-1.3
1,993,454	-				-0.3
1,993,487	+				+0.6
1,993,515	+				+1.2
1,993,516	-				-1.9
1,993,516	-				-2.5
1,993,516	-				+0.3
1,993,568	+				+1.7
1,993,568	+				-0.6
1,993,568	+				+2.7
1,993,569	-				-1.0
1,993,575	+				+1.4
1,993,575	+				+0.6
1,993,575	+				-0.9
1,993,575	+				-1.5
1,993,576	-				+0.7
1,993,639	+				+1.2
1,993,639	+				-0.8
1,993,639	+				-0.6
1,993,639	+				-0.9
1,993,640	-				-0.8
1,993,640	-				-0.7
1,993,640	-				-0.3
1,993,711	+				-0.4
1,993,711	+				-0.8
1,993,711	+				+0.8
1,993,711	+				+1.5
1,993,711	+				+0.7
1,993,796	-		Xcc-8004.2079.1	0.19	-0.8
1,994,046	-		Xcc-8004.2079.1	0.52	-1.7
1,994,046	-		Xcc-8004.2079.1	0.52	+1.9
1,994,136	-		Xcc-8004.2079.1	0.64	-0.5
1,994,313	-		Xcc-8004.2079.1	0.87	-1.7
1,994,313	-		Xcc-8004.2079.1	0.87	-2.8
1,994,313	-		Xcc-8004.2079.1	0.87	-0.3
1,994,313	-		Xcc-8004.2079.1	0.87	+0.4
1,994,418	+				-0.9
1,994,495	-				-0.5
1,994,495	-				-0.4
1,994,495	-				-0.3
1,994,936	-		Xcc-8004.2081.1	0.37	+0.8
1,994,936	-		Xcc-8004.2081.1	0.37	+0.8