Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1506.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1505.1 and Xcc-8004.1506.1 are separated by 62 nucleotidesXcc-8004.1506.1 and Xcc-8004.1507.1 overlap by 14 nucleotides Xcc-8004.1505.1: Xcc-8004.1505.1 - pilus biogenesis protein, at 1,435,773 to 1,437,809 Xcc-8004.1505.1 Xcc-8004.1506.1: Xcc-8004.1506.1 - Chemotaxis protein cheA (EC 2.7.3.-), at 1,437,872 to 1,444,909 Xcc-8004.1506.1 Xcc-8004.1507.1: Xcc-8004.1507.1 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,444,896 to 1,446,098 Xcc-8004.1507.1 Position (kb) 1437 1438 1439 1440 1441 1442 1443 1444 1445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1436.937 kb on + strand, within Xcc-8004.1505.1at 1436.938 kb on - strand, within Xcc-8004.1505.1at 1436.938 kb on - strand, within Xcc-8004.1505.1at 1437.858 kb on - strandat 1438.019 kb on + strandat 1438.020 kb on - strandat 1438.070 kb on + strandat 1438.071 kb on - strandat 1438.112 kb on + strandat 1438.112 kb on + strandat 1438.112 kb on + strandat 1438.236 kb on - strandat 1438.420 kb on + strandat 1438.679 kb on - strand, within Xcc-8004.1506.1at 1438.697 kb on + strand, within Xcc-8004.1506.1at 1438.698 kb on - strand, within Xcc-8004.1506.1at 1438.698 kb on - strand, within Xcc-8004.1506.1at 1438.973 kb on + strand, within Xcc-8004.1506.1at 1438.994 kb on + strand, within Xcc-8004.1506.1at 1439.081 kb on + strand, within Xcc-8004.1506.1at 1439.081 kb on + strand, within Xcc-8004.1506.1at 1439.081 kb on + strand, within Xcc-8004.1506.1at 1439.082 kb on - strand, within Xcc-8004.1506.1at 1439.084 kb on + strand, within Xcc-8004.1506.1at 1439.085 kb on - strand, within Xcc-8004.1506.1at 1439.085 kb on - strand, within Xcc-8004.1506.1at 1439.618 kb on + strand, within Xcc-8004.1506.1at 1439.618 kb on + strand, within Xcc-8004.1506.1at 1439.618 kb on + strand, within Xcc-8004.1506.1at 1439.618 kb on + strand, within Xcc-8004.1506.1at 1439.618 kb on + strand, within Xcc-8004.1506.1at 1439.619 kb on - strand, within Xcc-8004.1506.1at 1439.619 kb on - strand, within Xcc-8004.1506.1at 1439.619 kb on - strand, within Xcc-8004.1506.1at 1439.619 kb on - strand, within Xcc-8004.1506.1at 1439.619 kb on - strand, within Xcc-8004.1506.1at 1439.620 kb on + strand, within Xcc-8004.1506.1at 1439.620 kb on + strand, within Xcc-8004.1506.1at 1439.621 kb on - strand, within Xcc-8004.1506.1at 1439.621 kb on - strand, within Xcc-8004.1506.1at 1439.896 kb on - strand, within Xcc-8004.1506.1at 1440.074 kb on - strand, within Xcc-8004.1506.1at 1440.074 kb on - strand, within Xcc-8004.1506.1at 1440.123 kb on + strand, within Xcc-8004.1506.1at 1440.124 kb on - strand, within Xcc-8004.1506.1at 1440.485 kb on + strand, within Xcc-8004.1506.1at 1440.485 kb on + strand, within Xcc-8004.1506.1at 1440.485 kb on + strand, within Xcc-8004.1506.1at 1440.486 kb on - strand, within Xcc-8004.1506.1at 1440.488 kb on + strand, within Xcc-8004.1506.1at 1440.488 kb on + strand, within Xcc-8004.1506.1at 1440.488 kb on + strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.489 kb on - strand, within Xcc-8004.1506.1at 1440.779 kb on + strand, within Xcc-8004.1506.1at 1440.779 kb on + strand, within Xcc-8004.1506.1at 1440.779 kb on + strand, within Xcc-8004.1506.1at 1440.779 kb on + strand, within Xcc-8004.1506.1at 1440.780 kb on - strand, within Xcc-8004.1506.1at 1441.096 kb on + strand, within Xcc-8004.1506.1at 1441.096 kb on + strand, within Xcc-8004.1506.1at 1441.096 kb on + strand, within Xcc-8004.1506.1at 1441.098 kb on + strand, within Xcc-8004.1506.1at 1441.098 kb on + strand, within Xcc-8004.1506.1at 1441.098 kb on + strand, within Xcc-8004.1506.1at 1441.098 kb on + strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.099 kb on - strand, within Xcc-8004.1506.1at 1441.854 kb on - strand, within Xcc-8004.1506.1at 1442.367 kb on - strand, within Xcc-8004.1506.1at 1442.367 kb on - strand, within Xcc-8004.1506.1at 1442.975 kb on - strand, within Xcc-8004.1506.1at 1443.452 kb on + strand, within Xcc-8004.1506.1at 1444.173 kb on - strand, within Xcc-8004.1506.1at 1444.199 kb on + strand, within Xcc-8004.1506.1at 1444.199 kb on + strand, within Xcc-8004.1506.1at 1444.199 kb on + strand, within Xcc-8004.1506.1at 1444.214 kb on + strandat 1444.214 kb on + strandat 1444.214 kb on + strandat 1444.214 kb on + strandat 1444.214 kb on + strandat 1444.215 kb on - strandat 1444.215 kb on - strandat 1444.404 kb on - strandat 1444.404 kb on - strandat 1444.404 kb on - strandat 1444.404 kb on - strandat 1444.531 kb on - strandat 1444.531 kb on - strandat 1444.829 kb on + strandat 1444.830 kb on - strandat 1444.830 kb on - strandat 1444.874 kb on + strandat 1444.874 kb on + strandat 1444.874 kb on + strandat 1444.874 kb on + strandat 1444.874 kb on + strandat 1444.875 kb on - strandat 1444.875 kb on - strandat 1444.875 kb on - strandat 1444.907 kb on + strandat 1444.908 kb on - strandat 1444.908 kb on - strandat 1444.916 kb on + strandat 1445.404 kb on + strand, within Xcc-8004.1507.1at 1445.700 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.790 kb on + strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1at 1445.791 kb on - strand, within Xcc-8004.1507.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,436,937 + Xcc-8004.1505.1 0.57 +0.8
1,436,938 - Xcc-8004.1505.1 0.57 +0.3
1,436,938 - Xcc-8004.1505.1 0.57 +0.1
1,437,858 - +0.6
1,438,019 + -0.3
1,438,020 - -0.3
1,438,070 + +0.1
1,438,071 - +1.1
1,438,112 + +0.3
1,438,112 + -0.5
1,438,112 + +0.8
1,438,236 - -0.8
1,438,420 + +0.8
1,438,679 - Xcc-8004.1506.1 0.11 -1.2
1,438,697 + Xcc-8004.1506.1 0.12 +0.7
1,438,698 - Xcc-8004.1506.1 0.12 +1.0
1,438,698 - Xcc-8004.1506.1 0.12 -0.7
1,438,973 + Xcc-8004.1506.1 0.16 +1.0
1,438,994 + Xcc-8004.1506.1 0.16 -1.3
1,439,081 + Xcc-8004.1506.1 0.17 +0.7
1,439,081 + Xcc-8004.1506.1 0.17 -0.4
1,439,081 + Xcc-8004.1506.1 0.17 +1.0
1,439,082 - Xcc-8004.1506.1 0.17 +0.1
1,439,084 + Xcc-8004.1506.1 0.17 -0.6
1,439,085 - Xcc-8004.1506.1 0.17 +0.7
1,439,085 - Xcc-8004.1506.1 0.17 +0.7
1,439,618 + Xcc-8004.1506.1 0.25 +1.4
1,439,618 + Xcc-8004.1506.1 0.25 -0.9
1,439,618 + Xcc-8004.1506.1 0.25 -0.1
1,439,618 + Xcc-8004.1506.1 0.25 -1.2
1,439,618 + Xcc-8004.1506.1 0.25 +0.8
1,439,619 - Xcc-8004.1506.1 0.25 -0.6
1,439,619 - Xcc-8004.1506.1 0.25 +1.0
1,439,619 - Xcc-8004.1506.1 0.25 -1.0
1,439,619 - Xcc-8004.1506.1 0.25 +0.9
1,439,619 - Xcc-8004.1506.1 0.25 +0.0
1,439,620 + Xcc-8004.1506.1 0.25 -0.6
1,439,620 + Xcc-8004.1506.1 0.25 -0.2
1,439,621 - Xcc-8004.1506.1 0.25 +0.4
1,439,621 - Xcc-8004.1506.1 0.25 +3.3
1,439,896 - Xcc-8004.1506.1 0.29 -1.8
1,440,074 - Xcc-8004.1506.1 0.31 +0.9
1,440,074 - Xcc-8004.1506.1 0.31 +0.9
1,440,123 + Xcc-8004.1506.1 0.32 +0.8
1,440,124 - Xcc-8004.1506.1 0.32 -0.6
1,440,485 + Xcc-8004.1506.1 0.37 -0.6
1,440,485 + Xcc-8004.1506.1 0.37 +0.5
1,440,485 + Xcc-8004.1506.1 0.37 -0.0
1,440,486 - Xcc-8004.1506.1 0.37 +0.0
1,440,488 + Xcc-8004.1506.1 0.37 -0.5
1,440,488 + Xcc-8004.1506.1 0.37 -1.0
1,440,488 + Xcc-8004.1506.1 0.37 -0.8
1,440,489 - Xcc-8004.1506.1 0.37 -1.1
1,440,489 - Xcc-8004.1506.1 0.37 -1.5
1,440,489 - Xcc-8004.1506.1 0.37 +0.7
1,440,489 - Xcc-8004.1506.1 0.37 -0.2
1,440,489 - Xcc-8004.1506.1 0.37 -0.6
1,440,489 - Xcc-8004.1506.1 0.37 -3.6
1,440,489 - Xcc-8004.1506.1 0.37 +1.7
1,440,489 - Xcc-8004.1506.1 0.37 +1.4
1,440,489 - Xcc-8004.1506.1 0.37 +0.9
1,440,489 - Xcc-8004.1506.1 0.37 +0.9
1,440,489 - Xcc-8004.1506.1 0.37 -0.7
1,440,779 + Xcc-8004.1506.1 0.41 -0.1
1,440,779 + Xcc-8004.1506.1 0.41 +1.2
1,440,779 + Xcc-8004.1506.1 0.41 +0.9
1,440,779 + Xcc-8004.1506.1 0.41 +0.2
1,440,780 - Xcc-8004.1506.1 0.41 +0.8
1,441,096 + Xcc-8004.1506.1 0.46 -0.9
1,441,096 + Xcc-8004.1506.1 0.46 +1.2
1,441,096 + Xcc-8004.1506.1 0.46 -0.9
1,441,098 + Xcc-8004.1506.1 0.46 -0.2
1,441,098 + Xcc-8004.1506.1 0.46 -0.0
1,441,098 + Xcc-8004.1506.1 0.46 +1.5
1,441,098 + Xcc-8004.1506.1 0.46 +1.6
1,441,099 - Xcc-8004.1506.1 0.46 +1.1
1,441,099 - Xcc-8004.1506.1 0.46 -0.2
1,441,099 - Xcc-8004.1506.1 0.46 +1.1
1,441,099 - Xcc-8004.1506.1 0.46 +1.2
1,441,099 - Xcc-8004.1506.1 0.46 -1.5
1,441,099 - Xcc-8004.1506.1 0.46 -1.7
1,441,099 - Xcc-8004.1506.1 0.46 -0.6
1,441,099 - Xcc-8004.1506.1 0.46 -2.6
1,441,099 - Xcc-8004.1506.1 0.46 -0.3
1,441,854 - Xcc-8004.1506.1 0.57 +1.3
1,442,367 - Xcc-8004.1506.1 0.64 +1.6
1,442,367 - Xcc-8004.1506.1 0.64 -1.4
1,442,975 - Xcc-8004.1506.1 0.73 +1.9
1,443,452 + Xcc-8004.1506.1 0.79 +2.0
1,444,173 - Xcc-8004.1506.1 0.90 +0.6
1,444,199 + Xcc-8004.1506.1 0.90 -1.5
1,444,199 + Xcc-8004.1506.1 0.90 -1.8
1,444,199 + Xcc-8004.1506.1 0.90 -0.8
1,444,214 + +0.4
1,444,214 + +0.2
1,444,214 + -0.3
1,444,214 + +0.6
1,444,214 + -0.3
1,444,215 - +0.0
1,444,215 - -0.0
1,444,404 - +0.1
1,444,404 - +1.3
1,444,404 - -2.0
1,444,404 - +0.9
1,444,531 - -0.8
1,444,531 - -2.1
1,444,829 + -0.4
1,444,830 - +0.2
1,444,830 - +1.1
1,444,874 + +0.7
1,444,874 + -0.9
1,444,874 + -0.4
1,444,874 + -0.5
1,444,874 + -1.5
1,444,875 - -0.8
1,444,875 - +0.4
1,444,875 - -0.0
1,444,907 + +1.7
1,444,908 - -0.7
1,444,908 - +1.0
1,444,916 + +0.8
1,445,404 + Xcc-8004.1507.1 0.42 -1.6
1,445,700 + Xcc-8004.1507.1 0.67 -0.1
1,445,790 + Xcc-8004.1507.1 0.74 -1.2
1,445,790 + Xcc-8004.1507.1 0.74 -2.3
1,445,790 + Xcc-8004.1507.1 0.74 -1.2
1,445,790 + Xcc-8004.1507.1 0.74 +1.2
1,445,790 + Xcc-8004.1507.1 0.74 +1.3
1,445,790 + Xcc-8004.1507.1 0.74 -0.4
1,445,790 + Xcc-8004.1507.1 0.74 +0.9
1,445,790 + Xcc-8004.1507.1 0.74 +0.0
1,445,790 + Xcc-8004.1507.1 0.74 +2.0
1,445,790 + Xcc-8004.1507.1 0.74 -2.2
1,445,791 - Xcc-8004.1507.1 0.74 +0.6
1,445,791 - Xcc-8004.1507.1 0.74 -1.7
1,445,791 - Xcc-8004.1507.1 0.74 -1.8
1,445,791 - Xcc-8004.1507.1 0.74 -1.6
1,445,791 - Xcc-8004.1507.1 0.74 -0.5
1,445,791 - Xcc-8004.1507.1 0.74 -1.0
1,445,791 - Xcc-8004.1507.1 0.74 +0.1
1,445,791 - Xcc-8004.1507.1 0.74 -1.1
1,445,791 - Xcc-8004.1507.1 0.74 -0.9
1,445,791 - Xcc-8004.1507.1 0.74 +0.6
1,445,791 - Xcc-8004.1507.1 0.74 -0.6
1,445,791 - Xcc-8004.1507.1 0.74 +2.2
1,445,791 - Xcc-8004.1507.1 0.74 +1.8
1,445,791 - Xcc-8004.1507.1 0.74 +1.9

Or see this region's nucleotide sequence