Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1500.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1499.1 and Xcc-8004.1500.1 are separated by 204 nucleotidesXcc-8004.1500.1 and Xcc-8004.1501.1 overlap by 4 nucleotides Xcc-8004.1499.1: Xcc-8004.1499.1 - ADP-ribosylglycohydrolase family protein, at 1,431,234 to 1,432,157 Xcc-8004.1499.1 Xcc-8004.1500.1: Xcc-8004.1500.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,432,362 to 1,433,237 Xcc-8004.1500.1 Xcc-8004.1501.1: Xcc-8004.1501.1 - Glutathione synthetase (EC 6.3.2.3), at 1,433,234 to 1,434,184 Xcc-8004.1501.1 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.441 kb on + strand, within Xcc-8004.1499.1at 1431.441 kb on + strand, within Xcc-8004.1499.1at 1431.480 kb on + strand, within Xcc-8004.1499.1at 1431.493 kb on - strand, within Xcc-8004.1499.1at 1431.493 kb on - strand, within Xcc-8004.1499.1at 1431.504 kb on + strand, within Xcc-8004.1499.1at 1431.504 kb on + strand, within Xcc-8004.1499.1at 1431.505 kb on - strand, within Xcc-8004.1499.1at 1431.568 kb on - strand, within Xcc-8004.1499.1at 1431.913 kb on - strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.134 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.221 kb on - strandat 1432.221 kb on - strandat 1432.221 kb on - strandat 1432.224 kb on + strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.575 kb on + strand, within Xcc-8004.1500.1at 1432.576 kb on - strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.666 kb on + strand, within Xcc-8004.1500.1at 1432.666 kb on + strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.675 kb on + strand, within Xcc-8004.1500.1at 1432.676 kb on - strand, within Xcc-8004.1500.1at 1432.676 kb on - strand, within Xcc-8004.1500.1at 1432.682 kb on - strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.730 kb on - strand, within Xcc-8004.1500.1at 1432.730 kb on - strand, within Xcc-8004.1500.1at 1434.198 kb on + strandat 1434.198 kb on + strandat 1434.199 kb on - strandat 1434.199 kb on - strandat 1434.199 kb on - strandat 1434.217 kb on + strandat 1434.217 kb on + strandat 1434.218 kb on - strandat 1434.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,431,441 + Xcc-8004.1499.1 0.22 -1.2
1,431,441 + Xcc-8004.1499.1 0.22 -0.7
1,431,480 + Xcc-8004.1499.1 0.27 -1.7
1,431,493 - Xcc-8004.1499.1 0.28 -1.5
1,431,493 - Xcc-8004.1499.1 0.28 -0.1
1,431,504 + Xcc-8004.1499.1 0.29 +0.5
1,431,504 + Xcc-8004.1499.1 0.29 -0.8
1,431,505 - Xcc-8004.1499.1 0.29 -1.1
1,431,568 - Xcc-8004.1499.1 0.36 +0.1
1,431,913 - Xcc-8004.1499.1 0.73 +0.3
1,432,053 + Xcc-8004.1499.1 0.89 +0.3
1,432,053 + Xcc-8004.1499.1 0.89 -0.8
1,432,053 + Xcc-8004.1499.1 0.89 -0.5
1,432,053 + Xcc-8004.1499.1 0.89 -0.6
1,432,134 + -0.8
1,432,220 + -1.0
1,432,220 + +1.1
1,432,220 + -1.6
1,432,220 + +1.3
1,432,221 - -0.0
1,432,221 - -1.1
1,432,221 - -0.2
1,432,224 + -0.4
1,432,225 - -0.6
1,432,225 - +0.1
1,432,225 - +0.1
1,432,225 - +1.1
1,432,225 - +1.5
1,432,225 - +0.6
1,432,225 - +1.1
1,432,225 - -0.4
1,432,575 + Xcc-8004.1500.1 0.24 +1.0
1,432,576 - Xcc-8004.1500.1 0.24 +1.3
1,432,618 + Xcc-8004.1500.1 0.29 +0.3
1,432,618 + Xcc-8004.1500.1 0.29 -0.4
1,432,618 + Xcc-8004.1500.1 0.29 +0.1
1,432,618 + Xcc-8004.1500.1 0.29 -0.0
1,432,619 - Xcc-8004.1500.1 0.29 +0.5
1,432,619 - Xcc-8004.1500.1 0.29 -1.7
1,432,619 - Xcc-8004.1500.1 0.29 +0.7
1,432,619 - Xcc-8004.1500.1 0.29 -1.2
1,432,619 - Xcc-8004.1500.1 0.29 -0.4
1,432,619 - Xcc-8004.1500.1 0.29 -0.6
1,432,666 + Xcc-8004.1500.1 0.35 -0.0
1,432,666 + Xcc-8004.1500.1 0.35 -0.2
1,432,667 - Xcc-8004.1500.1 0.35 -0.9
1,432,667 - Xcc-8004.1500.1 0.35 +0.0
1,432,667 - Xcc-8004.1500.1 0.35 -0.0
1,432,667 - Xcc-8004.1500.1 0.35 +0.7
1,432,667 - Xcc-8004.1500.1 0.35 -0.4
1,432,667 - Xcc-8004.1500.1 0.35 -3.0
1,432,667 - Xcc-8004.1500.1 0.35 -0.7
1,432,675 + Xcc-8004.1500.1 0.36 +1.4
1,432,676 - Xcc-8004.1500.1 0.36 -0.1
1,432,676 - Xcc-8004.1500.1 0.36 -0.6
1,432,682 - Xcc-8004.1500.1 0.37 -0.6
1,432,729 + Xcc-8004.1500.1 0.42 +0.7
1,432,729 + Xcc-8004.1500.1 0.42 +0.5
1,432,729 + Xcc-8004.1500.1 0.42 +0.6
1,432,730 - Xcc-8004.1500.1 0.42 -1.4
1,432,730 - Xcc-8004.1500.1 0.42 -1.4
1,434,198 + +0.7
1,434,198 + -1.7
1,434,199 - -0.6
1,434,199 - -0.5
1,434,199 - -0.6
1,434,217 + +1.2
1,434,217 + -0.1
1,434,218 - -0.5
1,434,218 - +0.4

Or see this region's nucleotide sequence