Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1499.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,430,241	+				-1.3
1,430,241	+				+1.1
1,430,308	+				-0.6
1,430,318	+				-0.0
1,430,318	+				-0.1
1,430,318	+				+0.8
1,430,375	+				-0.6
1,430,375	+				+2.3
1,430,375	+				-1.2
1,430,375	+				-0.1
1,430,376	-				+0.8
1,430,376	-				+2.3
1,430,376	-				+0.5
1,430,459	-				-0.5
1,431,239	+				-0.4
1,431,239	+				+1.1
1,431,240	-				-1.2
1,431,250	+				+1.5
1,431,441	+		Xcc-8004.1499.1	0.22	-1.2
1,431,441	+		Xcc-8004.1499.1	0.22	-0.7
1,431,480	+		Xcc-8004.1499.1	0.27	-1.7
1,431,493	-		Xcc-8004.1499.1	0.28	-1.5
1,431,493	-		Xcc-8004.1499.1	0.28	-0.1
1,431,504	+		Xcc-8004.1499.1	0.29	+0.5
1,431,504	+		Xcc-8004.1499.1	0.29	-0.8
1,431,505	-		Xcc-8004.1499.1	0.29	-1.1
1,431,568	-		Xcc-8004.1499.1	0.36	+0.1
1,431,913	-		Xcc-8004.1499.1	0.73	+0.3
1,432,053	+		Xcc-8004.1499.1	0.89	+0.3
1,432,053	+		Xcc-8004.1499.1	0.89	-0.8
1,432,053	+		Xcc-8004.1499.1	0.89	-0.5
1,432,053	+		Xcc-8004.1499.1	0.89	-0.6
1,432,134	+				-0.8
1,432,220	+				-1.0
1,432,220	+				+1.1
1,432,220	+				-1.6
1,432,220	+				+1.3
1,432,221	-				-0.0
1,432,221	-				-1.1
1,432,221	-				-0.2
1,432,224	+				-0.4
1,432,225	-				-0.6
1,432,225	-				+0.1
1,432,225	-				+0.1
1,432,225	-				+1.1
1,432,225	-				+1.5
1,432,225	-				+0.6
1,432,225	-				+1.1
1,432,225	-				-0.4
1,432,575	+		Xcc-8004.1500.1	0.24	+1.0
1,432,576	-		Xcc-8004.1500.1	0.24	+1.3
1,432,618	+		Xcc-8004.1500.1	0.29	+0.3
1,432,618	+		Xcc-8004.1500.1	0.29	-0.4
1,432,618	+		Xcc-8004.1500.1	0.29	+0.1
1,432,618	+		Xcc-8004.1500.1	0.29	-0.0
1,432,619	-		Xcc-8004.1500.1	0.29	+0.5
1,432,619	-		Xcc-8004.1500.1	0.29	-1.7
1,432,619	-		Xcc-8004.1500.1	0.29	+0.7
1,432,619	-		Xcc-8004.1500.1	0.29	-1.2
1,432,619	-		Xcc-8004.1500.1	0.29	-0.4
1,432,619	-		Xcc-8004.1500.1	0.29	-0.6
1,432,666	+		Xcc-8004.1500.1	0.35	-0.0
1,432,666	+		Xcc-8004.1500.1	0.35	-0.2
1,432,667	-		Xcc-8004.1500.1	0.35	-0.9
1,432,667	-		Xcc-8004.1500.1	0.35	+0.0
1,432,667	-		Xcc-8004.1500.1	0.35	-0.0
1,432,667	-		Xcc-8004.1500.1	0.35	+0.7
1,432,667	-		Xcc-8004.1500.1	0.35	-0.4
1,432,667	-		Xcc-8004.1500.1	0.35	-3.0
1,432,667	-		Xcc-8004.1500.1	0.35	-0.7
1,432,675	+		Xcc-8004.1500.1	0.36	+1.4
1,432,676	-		Xcc-8004.1500.1	0.36	-0.1
1,432,676	-		Xcc-8004.1500.1	0.36	-0.6
1,432,682	-		Xcc-8004.1500.1	0.37	-0.6
1,432,729	+		Xcc-8004.1500.1	0.42	+0.7
1,432,729	+		Xcc-8004.1500.1	0.42	+0.5
1,432,729	+		Xcc-8004.1500.1	0.42	+0.6
1,432,730	-		Xcc-8004.1500.1	0.42	-1.4
1,432,730	-		Xcc-8004.1500.1	0.42	-1.4