Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1495.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,426,158	+		Xcc-8004.1494.1	0.66	+0.2
1,426,159	-		Xcc-8004.1494.1	0.66	+0.1
1,426,159	-		Xcc-8004.1494.1	0.66	+0.4
1,426,159	-		Xcc-8004.1494.1	0.66	+0.4
1,426,159	-		Xcc-8004.1494.1	0.66	+0.0
1,426,159	-		Xcc-8004.1494.1	0.66	-0.3
1,426,308	+		Xcc-8004.1494.1	0.72	-0.7
1,426,309	-		Xcc-8004.1494.1	0.72	-0.0
1,426,345	+		Xcc-8004.1494.1	0.74	-0.3
1,426,346	-		Xcc-8004.1494.1	0.74	+0.5
1,426,346	-		Xcc-8004.1494.1	0.74	-0.6
1,426,396	-		Xcc-8004.1494.1	0.76	-0.1
1,426,573	-		Xcc-8004.1494.1	0.83	-0.6
1,426,573	-		Xcc-8004.1494.1	0.83	+0.3
1,426,573	-		Xcc-8004.1494.1	0.83	+0.1
1,426,573	-		Xcc-8004.1494.1	0.83	+1.1
1,426,573	-		Xcc-8004.1494.1	0.83	-0.2
1,426,644	+		Xcc-8004.1494.1	0.86	+1.5
1,426,644	+		Xcc-8004.1494.1	0.86	+0.4
1,426,644	+		Xcc-8004.1494.1	0.86	-0.0
1,426,644	+		Xcc-8004.1494.1	0.86	-0.9
1,426,644	+		Xcc-8004.1494.1	0.86	-1.0
1,426,645	-		Xcc-8004.1494.1	0.86	+0.3
1,426,645	-		Xcc-8004.1494.1	0.86	-1.6
1,426,645	-		Xcc-8004.1494.1	0.86	-2.7
1,426,645	-		Xcc-8004.1494.1	0.86	+0.6
1,426,645	-		Xcc-8004.1494.1	0.86	-2.2
1,426,827	+				+0.8
1,426,827	+				-0.9
1,426,828	-				-1.0
1,427,278	+		Xcc-8004.1495.1	0.52	+0.4
1,427,278	+		Xcc-8004.1495.1	0.52	-1.1
1,427,279	-		Xcc-8004.1495.1	0.52	-0.6
1,427,279	-		Xcc-8004.1495.1	0.52	-0.0
1,427,279	-		Xcc-8004.1495.1	0.52	-0.9
1,427,524	-				-1.5
1,427,617	+				+0.7
1,427,617	+				+0.5
1,427,740	-				-0.6
1,427,740	-				-1.0
1,427,940	+				+1.3
1,427,997	+				-1.1
1,427,998	-				-1.6
1,427,998	-				-1.2
1,428,069	-				-1.8
1,428,210	+				-0.3
1,428,210	+				+0.5
1,428,210	+				+1.9
1,428,210	+				-0.4
1,428,210	+				-0.1
1,428,210	+				-1.8
1,428,211	-				+0.5
1,428,211	-				-2.6
1,428,211	-				-0.7
1,428,211	-				-0.9
1,428,211	-				+0.9
1,428,211	-				-0.4
1,428,211	-				+0.9
1,428,211	-				+1.2
1,428,211	-				-1.2
1,428,211	-				-0.1
1,428,211	-				-0.1
1,428,211	-				+0.4
1,428,216	+				-1.2
1,428,216	+				+0.0
1,428,216	+				-0.9
1,428,216	+				+1.5
1,428,216	+				-0.4
1,428,216	+				-0.6
1,428,216	+				-0.8
1,428,217	-				+1.7
1,428,217	-				-0.1
1,428,217	-				-0.7
1,428,217	-				+0.5
1,428,217	-				-0.2
1,428,217	-				+1.3
1,428,217	-				+0.4
1,428,369	+		Xcc-8004.1496.1	0.17	-0.0
1,428,369	+		Xcc-8004.1496.1	0.17	+1.0
1,428,370	-		Xcc-8004.1496.1	0.17	+0.8
1,428,370	-		Xcc-8004.1496.1	0.17	-1.0
1,428,370	-		Xcc-8004.1496.1	0.17	-1.2
1,428,370	-		Xcc-8004.1496.1	0.17	-1.4
1,428,370	-		Xcc-8004.1496.1	0.17	-2.6
1,428,370	-		Xcc-8004.1496.1	0.17	-0.9
1,428,381	+		Xcc-8004.1496.1	0.17	-0.1
1,428,381	+		Xcc-8004.1496.1	0.17	+0.8
1,428,381	+		Xcc-8004.1496.1	0.17	-1.5
1,428,381	+		Xcc-8004.1496.1	0.17	+1.2
1,428,382	-		Xcc-8004.1496.1	0.17	-2.0