Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1480.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,403,213	-				-0.6
1,403,213	-				+1.1
1,403,440	+				-1.3
1,403,440	+				+2.0
1,403,441	-				+0.4
1,403,441	-				-0.6
1,403,447	+				-1.4
1,403,447	+				+0.4
1,403,447	+				+1.2
1,403,447	+				+2.7
1,403,448	-				+0.5
1,403,448	-				+1.0
1,403,448	-				+0.7
1,403,448	-				+0.0
1,403,466	+				+1.0
1,403,467	-				-0.8
1,403,467	-				-0.8
1,403,562	+				+0.6
1,403,563	-				-1.4
1,403,563	-				+1.8
1,403,563	-				+1.4
1,403,592	+				+1.0
1,403,593	-				+0.3
1,403,743	+		Xcc-8004.1478.1	0.33	+0.1
1,403,871	+		Xcc-8004.1478.1	0.56	-1.1
1,403,871	+		Xcc-8004.1478.1	0.56	-2.6
1,403,872	-		Xcc-8004.1478.1	0.56	+1.2
1,403,872	-		Xcc-8004.1478.1	0.56	-2.1
1,403,872	-		Xcc-8004.1478.1	0.56	+0.5
1,403,949	+		Xcc-8004.1478.1	0.70	-0.7
1,403,973	+		Xcc-8004.1478.1	0.75	-0.9
1,403,973	+		Xcc-8004.1478.1	0.75	+0.7
1,403,973	+		Xcc-8004.1478.1	0.75	+1.0
1,403,974	-		Xcc-8004.1478.1	0.75	-0.1
1,403,974	-		Xcc-8004.1478.1	0.75	+1.6
1,403,974	-		Xcc-8004.1478.1	0.75	+0.4
1,404,016	+		Xcc-8004.1478.1	0.82	-1.1
1,404,016	+		Xcc-8004.1478.1	0.82	+0.7
1,404,016	+		Xcc-8004.1478.1	0.82	-1.9
1,404,017	-		Xcc-8004.1478.1	0.83	-0.7
1,404,017	-		Xcc-8004.1478.1	0.83	+0.9
1,404,127	-				+1.4
1,404,136	+				+0.7
1,404,136	+				-0.6
1,404,137	-				+0.9
1,404,149	+				-0.2
1,404,149	+				-1.3
1,404,149	+				-0.7
1,404,149	+				+0.0
1,404,149	+				-0.8
1,404,149	+				+0.1
1,404,158	+				-0.7
1,404,158	+				+1.1
1,404,159	-				-0.1
1,404,159	-				-0.0
1,404,159	-				-3.5
1,404,208	+				-0.6
1,404,297	+				-0.3
1,404,297	+				+0.8
1,404,297	+				-0.3
1,404,297	+				+1.0
1,404,298	-				+0.6
1,404,298	-				+0.9
1,404,298	-				-0.4
1,404,298	-				-1.1
1,404,298	-				+1.5
1,404,298	-				-0.7
1,404,833	+		Xcc-8004.1480.1	0.15	-0.8
1,404,834	-		Xcc-8004.1480.1	0.15	+1.4
1,404,834	-		Xcc-8004.1480.1	0.15	+1.3
1,405,199	+		Xcc-8004.1480.1	0.24	-1.2
1,405,349	+		Xcc-8004.1480.1	0.28	-0.3
1,405,381	+		Xcc-8004.1480.1	0.29	+0.1
1,405,917	+		Xcc-8004.1480.1	0.42	+1.4
1,405,917	+		Xcc-8004.1480.1	0.42	-0.0
1,405,918	-		Xcc-8004.1480.1	0.42	+1.3
1,405,918	-		Xcc-8004.1480.1	0.42	+1.1
1,406,292	-		Xcc-8004.1480.1	0.51	-0.1
1,406,829	-		Xcc-8004.1480.1	0.64	-2.0
1,407,014	+		Xcc-8004.1480.1	0.68	+0.5
1,407,179	+		Xcc-8004.1480.1	0.72	+2.4
1,407,179	+		Xcc-8004.1480.1	0.72	-0.6
1,407,179	+		Xcc-8004.1480.1	0.72	-0.2
1,407,179	+		Xcc-8004.1480.1	0.72	+0.2
1,407,180	-		Xcc-8004.1480.1	0.72	+0.4
1,407,198	-		Xcc-8004.1480.1	0.73	-1.5
1,407,212	+		Xcc-8004.1480.1	0.73	+0.9
1,407,212	+		Xcc-8004.1480.1	0.73	+1.9
1,407,212	+		Xcc-8004.1480.1	0.73	-0.7
1,407,212	+		Xcc-8004.1480.1	0.73	-0.9
1,407,213	-		Xcc-8004.1480.1	0.73	-0.3
1,407,213	-		Xcc-8004.1480.1	0.73	+1.4
1,407,213	-		Xcc-8004.1480.1	0.73	+1.5
1,407,244	+		Xcc-8004.1480.1	0.74	+1.5
1,407,245	-		Xcc-8004.1480.1	0.74	-0.0
1,407,716	+		Xcc-8004.1480.1	0.85	-0.7
1,407,716	+		Xcc-8004.1480.1	0.85	-0.6
1,407,717	-		Xcc-8004.1480.1	0.85	+0.4
1,407,717	-		Xcc-8004.1480.1	0.85	-0.0
1,407,717	-		Xcc-8004.1480.1	0.85	+0.2
1,407,717	-		Xcc-8004.1480.1	0.85	+0.6
1,407,717	-		Xcc-8004.1480.1	0.85	+0.7
1,407,717	-		Xcc-8004.1480.1	0.85	+1.1
1,407,717	-		Xcc-8004.1480.1	0.85	+0.3
1,407,717	-		Xcc-8004.1480.1	0.85	-2.0
1,407,988	-				+1.0
1,408,046	+				-1.8
1,408,055	+				+1.4
1,408,055	+				-0.2
1,408,236	+				+0.3
1,408,237	-				+1.0
1,408,422	+				+1.2
1,408,422	+				+0.2
1,408,422	+				+0.7
1,408,499	+				+0.6
1,408,499	+				-1.3
1,408,499	+				-0.6
1,408,500	-				-0.1
1,408,500	-				+1.3
1,408,563	+				-0.7
1,408,595	+				-0.3
1,408,613	+				-0.6
1,408,614	-				-0.1
1,408,614	-				-0.1
1,408,655	+				-0.6
1,408,655	+				-0.7
1,408,656	-				-0.3
1,408,779	-				-0.6
1,408,779	-				-0.6
1,408,793	+				-1.0
1,408,811	+				+0.4
1,408,812	-				+0.7
1,408,844	+		Xcc-8004.1481.1	0.11	-1.1
1,408,844	+		Xcc-8004.1481.1	0.11	-0.7
1,408,848	-		Xcc-8004.1481.1	0.11	+1.1
1,408,919	+		Xcc-8004.1481.1	0.13	+0.7
1,408,919	+		Xcc-8004.1481.1	0.13	+0.5
1,408,920	-		Xcc-8004.1481.1	0.13	+0.2
1,408,920	-		Xcc-8004.1481.1	0.13	-0.7
1,408,920	-		Xcc-8004.1481.1	0.13	+0.6
1,408,920	-		Xcc-8004.1481.1	0.13	-0.3
1,408,920	-		Xcc-8004.1481.1	0.13	+1.2
1,408,920	-		Xcc-8004.1481.1	0.13	+1.0
1,408,925	+		Xcc-8004.1481.1	0.14	-0.6
1,408,925	+		Xcc-8004.1481.1	0.14	-1.5
1,408,926	-		Xcc-8004.1481.1	0.14	+0.7
1,409,030	+		Xcc-8004.1481.1	0.18	-1.0
1,409,030	+		Xcc-8004.1481.1	0.18	-0.4
1,409,114	+		Xcc-8004.1481.1	0.21	-0.2
1,409,114	+		Xcc-8004.1481.1	0.21	+0.9
1,409,114	+		Xcc-8004.1481.1	0.21	+1.6
1,409,114	+		Xcc-8004.1481.1	0.21	+1.2
1,409,114	+		Xcc-8004.1481.1	0.21	-0.6
1,409,115	-		Xcc-8004.1481.1	0.21	+0.1
1,409,147	+		Xcc-8004.1481.1	0.22	-0.6
1,409,147	+		Xcc-8004.1481.1	0.22	+0.1
1,409,147	+		Xcc-8004.1481.1	0.22	+0.7
1,409,147	+		Xcc-8004.1481.1	0.22	+0.6
1,409,148	-		Xcc-8004.1481.1	0.22	-0.9
1,409,148	-		Xcc-8004.1481.1	0.22	-0.5
1,409,148	-		Xcc-8004.1481.1	0.22	+1.4
1,409,165	+		Xcc-8004.1481.1	0.23	-1.5
1,409,204	+		Xcc-8004.1481.1	0.24	-0.3
1,409,248	+		Xcc-8004.1481.1	0.26	+0.1