Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1478.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,402,588	-		Xcc-8004.1476.1	0.66	-1.3
1,402,730	+		Xcc-8004.1476.1	0.74	-1.0
1,402,746	+		Xcc-8004.1476.1	0.74	+0.7
1,402,819	+		Xcc-8004.1476.1	0.78	-1.0
1,402,820	-		Xcc-8004.1476.1	0.79	+2.0
1,402,820	-		Xcc-8004.1476.1	0.79	-0.2
1,402,820	-		Xcc-8004.1476.1	0.79	-0.2
1,402,872	+		Xcc-8004.1476.1	0.81	-2.0
1,402,872	+		Xcc-8004.1476.1	0.81	+2.1
1,402,873	-		Xcc-8004.1476.1	0.81	+0.5
1,402,873	-		Xcc-8004.1476.1	0.81	+1.5
1,403,061	+				+0.1
1,403,061	+				+0.5
1,403,061	+				+0.0
1,403,061	+				+1.1
1,403,062	-				-0.1
1,403,164	-				+0.8
1,403,213	-				-0.6
1,403,213	-				+1.1
1,403,440	+				-1.3
1,403,440	+				+2.0
1,403,441	-				+0.4
1,403,441	-				-0.6
1,403,447	+				-1.4
1,403,447	+				+0.4
1,403,447	+				+1.2
1,403,447	+				+2.7
1,403,448	-				+0.5
1,403,448	-				+1.0
1,403,448	-				+0.7
1,403,448	-				+0.0
1,403,466	+				+1.0
1,403,467	-				-0.8
1,403,467	-				-0.8
1,403,562	+				+0.6
1,403,563	-				-1.4
1,403,563	-				+1.8
1,403,563	-				+1.4
1,403,592	+				+1.0
1,403,593	-				+0.3
1,403,743	+		Xcc-8004.1478.1	0.33	+0.1
1,403,871	+		Xcc-8004.1478.1	0.56	-1.1
1,403,871	+		Xcc-8004.1478.1	0.56	-2.6
1,403,872	-		Xcc-8004.1478.1	0.56	+1.2
1,403,872	-		Xcc-8004.1478.1	0.56	-2.1
1,403,872	-		Xcc-8004.1478.1	0.56	+0.5
1,403,949	+		Xcc-8004.1478.1	0.70	-0.7
1,403,973	+		Xcc-8004.1478.1	0.75	-0.9
1,403,973	+		Xcc-8004.1478.1	0.75	+0.7
1,403,973	+		Xcc-8004.1478.1	0.75	+1.0
1,403,974	-		Xcc-8004.1478.1	0.75	-0.1
1,403,974	-		Xcc-8004.1478.1	0.75	+1.6
1,403,974	-		Xcc-8004.1478.1	0.75	+0.4
1,404,016	+		Xcc-8004.1478.1	0.82	-1.1
1,404,016	+		Xcc-8004.1478.1	0.82	+0.7
1,404,016	+		Xcc-8004.1478.1	0.82	-1.9
1,404,017	-		Xcc-8004.1478.1	0.83	-0.7
1,404,017	-		Xcc-8004.1478.1	0.83	+0.9
1,404,127	-				+1.4
1,404,136	+				+0.7
1,404,136	+				-0.6
1,404,137	-				+0.9
1,404,149	+				-0.2
1,404,149	+				-1.3
1,404,149	+				-0.7
1,404,149	+				+0.0
1,404,149	+				-0.8
1,404,149	+				+0.1
1,404,158	+				-0.7
1,404,158	+				+1.1
1,404,159	-				-0.1
1,404,159	-				-0.0
1,404,159	-				-3.5
1,404,208	+				-0.6
1,404,297	+				-0.3
1,404,297	+				+0.8
1,404,297	+				-0.3
1,404,297	+				+1.0
1,404,298	-				+0.6
1,404,298	-				+0.9
1,404,298	-				-0.4
1,404,298	-				-1.1
1,404,298	-				+1.5
1,404,298	-				-0.7
1,404,833	+		Xcc-8004.1480.1	0.15	-0.8
1,404,834	-		Xcc-8004.1480.1	0.15	+1.4
1,404,834	-		Xcc-8004.1480.1	0.15	+1.3