Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1475.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,399,928	+				+0.3
1,399,983	+				-2.5
1,399,983	+				+0.4
1,399,984	-				-1.1
1,399,984	-				+0.2
1,399,984	-				-1.0
1,400,008	+				-0.1
1,400,008	+				-0.4
1,400,008	+				-1.2
1,400,008	+				-0.6
1,400,008	+				+1.4
1,400,008	+				-0.1
1,400,009	-				-0.9
1,400,009	-				+1.0
1,400,009	-				-0.4
1,400,009	-				-0.2
1,400,025	+				+0.6
1,400,026	-				-1.8
1,400,035	+				+0.1
1,400,036	-				-1.1
1,400,101	+				+0.8
1,400,101	+				+1.4
1,400,101	+				-0.2
1,400,101	+				+0.7
1,400,101	+				-0.4
1,400,101	+				+1.2
1,400,101	+				+0.9
1,400,101	+				-0.5
1,400,101	+				-2.2
1,400,102	-				-0.0
1,400,102	-				-2.6
1,400,102	-				-1.4
1,400,102	-				+1.8
1,400,102	-				-0.1
1,400,102	-				-0.1
1,400,102	-				+1.2
1,400,102	-				-1.5
1,400,102	-				-2.2
1,400,102	-				-1.6
1,400,110	+				+0.7
1,400,111	-				+0.7
1,400,198	+				+0.7
1,400,198	+				-1.3
1,400,301	-				+0.9
1,400,301	-				-0.7
1,400,301	-				+0.9
1,400,301	-				+0.8
1,400,419	+		Xcc-8004.1474.1	0.30	-0.5
1,400,419	+		Xcc-8004.1474.1	0.30	+0.1
1,400,419	+		Xcc-8004.1474.1	0.30	+1.6
1,400,420	-		Xcc-8004.1474.1	0.30	+0.3
1,400,420	-		Xcc-8004.1474.1	0.30	-0.2
1,400,420	-		Xcc-8004.1474.1	0.30	+1.0
1,400,420	-		Xcc-8004.1474.1	0.30	+1.2
1,400,420	-		Xcc-8004.1474.1	0.30	-1.6
1,400,420	-		Xcc-8004.1474.1	0.30	+0.1
1,400,420	-		Xcc-8004.1474.1	0.30	+0.9
1,400,420	-		Xcc-8004.1474.1	0.30	-0.7
1,400,423	+		Xcc-8004.1474.1	0.31	-0.3
1,400,423	+		Xcc-8004.1474.1	0.31	-1.2
1,400,423	+		Xcc-8004.1474.1	0.31	-2.8
1,400,423	+		Xcc-8004.1474.1	0.31	+0.1
1,400,423	+		Xcc-8004.1474.1	0.31	+1.6
1,400,423	+		Xcc-8004.1474.1	0.31	+1.3
1,400,423	+		Xcc-8004.1474.1	0.31	+0.5
1,400,423	+		Xcc-8004.1474.1	0.31	+0.9
1,400,423	+		Xcc-8004.1474.1	0.31	+1.4
1,400,423	+		Xcc-8004.1474.1	0.31	+0.2
1,400,424	-		Xcc-8004.1474.1	0.31	+0.7
1,400,424	-		Xcc-8004.1474.1	0.31	+0.9
1,400,424	-		Xcc-8004.1474.1	0.31	+0.7
1,400,424	-		Xcc-8004.1474.1	0.31	-2.2
1,400,424	-		Xcc-8004.1474.1	0.31	-0.1
1,400,424	-		Xcc-8004.1474.1	0.31	-0.5
1,400,424	-		Xcc-8004.1474.1	0.31	+1.4
1,400,465	+		Xcc-8004.1474.1	0.41	+0.1
1,400,465	+		Xcc-8004.1474.1	0.41	+1.3
1,400,465	+		Xcc-8004.1474.1	0.41	+1.3
1,400,465	+		Xcc-8004.1474.1	0.41	+1.1
1,400,465	+		Xcc-8004.1474.1	0.41	+0.3
1,400,497	+		Xcc-8004.1474.1	0.49	+1.5
1,400,497	+		Xcc-8004.1474.1	0.49	-0.9
1,400,497	+		Xcc-8004.1474.1	0.49	+0.2
1,400,497	+		Xcc-8004.1474.1	0.49	-0.2
1,400,498	-		Xcc-8004.1474.1	0.49	+0.6
1,400,498	-		Xcc-8004.1474.1	0.49	+0.1
1,400,498	-		Xcc-8004.1474.1	0.49	+0.8
1,400,498	-		Xcc-8004.1474.1	0.49	+0.0
1,400,498	-		Xcc-8004.1474.1	0.49	+1.3
1,400,498	-		Xcc-8004.1474.1	0.49	-0.1
1,400,615	+		Xcc-8004.1474.1	0.78	-1.6
1,400,615	+		Xcc-8004.1474.1	0.78	+0.9
1,400,616	-		Xcc-8004.1474.1	0.78	+1.1
1,400,616	-		Xcc-8004.1474.1	0.78	-0.0
1,400,616	-		Xcc-8004.1474.1	0.78	+0.1
1,400,616	-		Xcc-8004.1474.1	0.78	-1.2
1,400,616	-		Xcc-8004.1474.1	0.78	+2.0
1,400,616	-		Xcc-8004.1474.1	0.78	-0.6
1,400,616	-		Xcc-8004.1474.1	0.78	+1.2
1,400,616	-		Xcc-8004.1474.1	0.78	-0.8
1,400,616	-		Xcc-8004.1474.1	0.78	-0.9
1,400,777	+				-0.9
1,400,777	+				-0.1
1,400,777	+				-0.8
1,400,777	+				+0.6
1,400,778	-				+0.3
1,400,778	-				+1.6
1,400,778	-				-0.7
1,400,778	-				-1.2
1,400,778	-				-1.0
1,400,778	-				+0.9
1,400,778	-				+1.0
1,400,778	-				-0.1
1,400,778	-				-0.4
1,400,778	-				-1.2
1,400,783	+				+1.5
1,400,784	-				-0.3
1,400,784	-				+1.1
1,400,784	-				-0.9
1,400,822	+				-0.6
1,400,903	+		Xcc-8004.1475.1	0.25	+1.7
1,400,903	+		Xcc-8004.1475.1	0.25	+0.4
1,400,903	+		Xcc-8004.1475.1	0.25	-0.5
1,400,903	+		Xcc-8004.1475.1	0.25	-1.8
1,400,904	-		Xcc-8004.1475.1	0.25	+0.8
1,400,906	+		Xcc-8004.1475.1	0.26	+1.0
1,400,906	+		Xcc-8004.1475.1	0.26	+0.4
1,400,907	-		Xcc-8004.1475.1	0.26	+1.3
1,400,907	-		Xcc-8004.1475.1	0.26	+1.1
1,400,907	-		Xcc-8004.1475.1	0.26	+0.2
1,400,907	-		Xcc-8004.1475.1	0.26	+0.1
1,400,966	+		Xcc-8004.1475.1	0.38	+0.2
1,400,967	-		Xcc-8004.1475.1	0.38	-0.1
1,401,086	+		Xcc-8004.1475.1	0.63	+0.2
1,401,086	+		Xcc-8004.1475.1	0.63	-0.6
1,401,086	+		Xcc-8004.1475.1	0.63	+1.1
1,401,086	+		Xcc-8004.1475.1	0.63	+2.1
1,401,086	+		Xcc-8004.1475.1	0.63	+1.5
1,401,087	-		Xcc-8004.1475.1	0.63	-1.0
1,401,087	-		Xcc-8004.1475.1	0.63	+0.8
1,401,087	-		Xcc-8004.1475.1	0.63	+1.4
1,401,113	+		Xcc-8004.1475.1	0.69	+1.0
1,401,114	-		Xcc-8004.1475.1	0.69	+1.3
1,401,114	-		Xcc-8004.1475.1	0.69	+0.9
1,401,114	-		Xcc-8004.1475.1	0.69	-0.8
1,401,131	+		Xcc-8004.1475.1	0.72	+0.2
1,401,131	+		Xcc-8004.1475.1	0.72	-0.1
1,401,131	+		Xcc-8004.1475.1	0.72	-0.3
1,401,132	-		Xcc-8004.1475.1	0.72	+0.0
1,401,276	+				-0.7
1,401,276	+				-1.4
1,401,276	+				+0.5
1,401,276	+				+0.4
1,401,277	-				-0.7
1,401,277	-				-1.4
1,401,320	+				-0.4
1,401,320	+				-1.1
1,401,320	+				-0.1
1,401,321	-				-0.8
1,401,444	+				-0.6
1,401,725	+		Xcc-8004.1476.1	0.18	+0.5
1,401,726	-		Xcc-8004.1476.1	0.18	+1.1
1,401,827	-		Xcc-8004.1476.1	0.23	-1.7
1,401,827	-		Xcc-8004.1476.1	0.23	+1.0
1,401,855	+		Xcc-8004.1476.1	0.25	+1.7
1,401,856	-		Xcc-8004.1476.1	0.25	+0.3
1,401,856	-		Xcc-8004.1476.1	0.25	+0.5
1,401,957	+		Xcc-8004.1476.1	0.31	+0.7
1,401,958	-		Xcc-8004.1476.1	0.31	-1.7
1,402,050	+		Xcc-8004.1476.1	0.36	+0.9
1,402,051	-		Xcc-8004.1476.1	0.36	+0.7
1,402,107	+		Xcc-8004.1476.1	0.39	-0.9
1,402,108	-		Xcc-8004.1476.1	0.39	+0.8
1,402,212	+		Xcc-8004.1476.1	0.45	+1.5
1,402,213	-		Xcc-8004.1476.1	0.45	-2.2
1,402,213	-		Xcc-8004.1476.1	0.45	-0.0
1,402,213	-		Xcc-8004.1476.1	0.45	-1.5