Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.139.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.137.1 and Xcc-8004.138.1 overlap by 2 nucleotidesXcc-8004.138.1 and Xcc-8004.139.1 overlap by 1 nucleotidesXcc-8004.139.1 and Xcc-8004.140.1 are separated by 6 nucleotides Xcc-8004.137.1: Xcc-8004.137.1 - FIG01209674: hypothetical protein, at 125,338 to 125,499 Xcc-8004.137.1 Xcc-8004.138.1: Xcc-8004.138.1 - FIG01211329: hypothetical protein, at 125,498 to 126,046 Xcc-8004.138.1 Xcc-8004.139.1: Xcc-8004.139.1 - Ku domain protein, at 126,046 to 126,987 Xcc-8004.139.1 Xcc-8004.140.1: Xcc-8004.140.1 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 126,994 to 129,999 Xcc-8004.140.1 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 125.064 kb on + strandat 125.065 kb on - strandat 125.065 kb on - strandat 125.088 kb on + strandat 125.088 kb on + strandat 125.089 kb on - strandat 125.089 kb on - strandat 125.089 kb on - strandat 125.207 kb on + strandat 125.208 kb on - strandat 125.208 kb on - strandat 125.208 kb on - strandat 125.239 kb on + strandat 125.239 kb on + strandat 125.239 kb on + strandat 125.240 kb on - strandat 125.252 kb on + strandat 125.252 kb on + strandat 125.253 kb on - strandat 125.339 kb on + strandat 125.339 kb on + strandat 125.370 kb on + strand, within Xcc-8004.137.1at 125.370 kb on + strand, within Xcc-8004.137.1at 125.426 kb on + strand, within Xcc-8004.137.1at 125.426 kb on + strand, within Xcc-8004.137.1at 125.427 kb on - strand, within Xcc-8004.137.1at 125.427 kb on - strand, within Xcc-8004.137.1at 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.502 kb on + strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.503 kb on - strandat 125.611 kb on - strand, within Xcc-8004.138.1at 125.732 kb on - strand, within Xcc-8004.138.1at 125.751 kb on + strand, within Xcc-8004.138.1at 125.777 kb on + strand, within Xcc-8004.138.1at 125.777 kb on + strand, within Xcc-8004.138.1at 125.777 kb on + strand, within Xcc-8004.138.1at 125.777 kb on + strand, within Xcc-8004.138.1at 125.778 kb on - strand, within Xcc-8004.138.1at 125.778 kb on - strand, within Xcc-8004.138.1at 125.778 kb on - strand, within Xcc-8004.138.1at 125.778 kb on - strand, within Xcc-8004.138.1at 125.778 kb on - strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.846 kb on + strand, within Xcc-8004.138.1at 125.847 kb on - strand, within Xcc-8004.138.1at 125.847 kb on - strand, within Xcc-8004.138.1at 125.847 kb on - strand, within Xcc-8004.138.1at 125.847 kb on - strand, within Xcc-8004.138.1at 126.010 kb on + strandat 126.010 kb on + strandat 126.010 kb on + strandat 126.011 kb on - strandat 126.011 kb on - strandat 126.011 kb on - strandat 126.011 kb on - strandat 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.259 kb on + strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.260 kb on - strand, within Xcc-8004.139.1at 126.376 kb on + strand, within Xcc-8004.139.1at 126.377 kb on - strand, within Xcc-8004.139.1at 126.377 kb on - strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.412 kb on + strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.413 kb on - strand, within Xcc-8004.139.1at 126.601 kb on + strand, within Xcc-8004.139.1at 126.680 kb on - strand, within Xcc-8004.139.1at 127.009 kb on + strandat 127.010 kb on - strandat 127.241 kb on - strandat 127.241 kb on - strandat 127.298 kb on + strand, within Xcc-8004.140.1at 127.299 kb on - strand, within Xcc-8004.140.1at 127.299 kb on - strand, within Xcc-8004.140.1at 127.409 kb on + strand, within Xcc-8004.140.1at 127.410 kb on - strand, within Xcc-8004.140.1at 127.410 kb on - strand, within Xcc-8004.140.1at 127.720 kb on - strand, within Xcc-8004.140.1at 127.949 kb on + strand, within Xcc-8004.140.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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125,064 + +1.1
125,065 - -0.2
125,065 - +0.9
125,088 + -1.0
125,088 + -0.4
125,089 - -0.0
125,089 - +1.2
125,089 - -0.8
125,207 + -0.3
125,208 - -1.1
125,208 - +0.1
125,208 - +1.1
125,239 + -0.6
125,239 + +0.8
125,239 + -0.3
125,240 - -0.5
125,252 + -0.9
125,252 + +0.8
125,253 - -1.1
125,339 + +0.2
125,339 + -0.6
125,370 + Xcc-8004.137.1 0.20 -2.0
125,370 + Xcc-8004.137.1 0.20 -0.3
125,426 + Xcc-8004.137.1 0.54 +0.2
125,426 + Xcc-8004.137.1 0.54 -0.5
125,427 - Xcc-8004.137.1 0.55 +1.2
125,427 - Xcc-8004.137.1 0.55 +0.3
125,502 + -0.0
125,502 + +0.1
125,502 + -0.8
125,502 + -2.3
125,502 + +1.6
125,502 + -0.7
125,502 + -0.6
125,502 + +0.2
125,502 + +0.6
125,502 + -1.5
125,502 + +0.6
125,502 + -1.1
125,502 + -0.2
125,502 + +0.0
125,502 + -0.8
125,502 + +1.8
125,503 - +1.3
125,503 - +0.2
125,503 - -0.6
125,503 - +0.3
125,503 - +0.9
125,503 - -0.3
125,503 - +0.3
125,503 - -1.7
125,503 - +0.2
125,503 - +0.1
125,503 - -0.0
125,503 - -0.1
125,503 - -0.1
125,611 - Xcc-8004.138.1 0.21 +0.6
125,732 - Xcc-8004.138.1 0.43 -0.1
125,751 + Xcc-8004.138.1 0.46 -0.9
125,777 + Xcc-8004.138.1 0.51 -1.1
125,777 + Xcc-8004.138.1 0.51 -0.3
125,777 + Xcc-8004.138.1 0.51 +0.5
125,777 + Xcc-8004.138.1 0.51 +1.4
125,778 - Xcc-8004.138.1 0.51 -1.8
125,778 - Xcc-8004.138.1 0.51 -0.5
125,778 - Xcc-8004.138.1 0.51 -1.5
125,778 - Xcc-8004.138.1 0.51 -1.6
125,778 - Xcc-8004.138.1 0.51 +0.7
125,846 + Xcc-8004.138.1 0.63 -0.2
125,846 + Xcc-8004.138.1 0.63 +0.6
125,846 + Xcc-8004.138.1 0.63 +0.9
125,846 + Xcc-8004.138.1 0.63 +0.8
125,846 + Xcc-8004.138.1 0.63 -1.3
125,846 + Xcc-8004.138.1 0.63 -1.0
125,847 - Xcc-8004.138.1 0.64 -0.1
125,847 - Xcc-8004.138.1 0.64 -0.5
125,847 - Xcc-8004.138.1 0.64 +0.9
125,847 - Xcc-8004.138.1 0.64 -0.8
126,010 + +0.2
126,010 + +1.0
126,010 + +0.5
126,011 - +0.3
126,011 - -0.7
126,011 - -0.9
126,011 - +0.5
126,259 + Xcc-8004.139.1 0.23 -0.5
126,259 + Xcc-8004.139.1 0.23 +0.8
126,259 + Xcc-8004.139.1 0.23 -1.2
126,259 + Xcc-8004.139.1 0.23 +0.6
126,259 + Xcc-8004.139.1 0.23 -0.5
126,259 + Xcc-8004.139.1 0.23 -1.6
126,259 + Xcc-8004.139.1 0.23 -0.3
126,259 + Xcc-8004.139.1 0.23 +0.5
126,259 + Xcc-8004.139.1 0.23 +1.3
126,259 + Xcc-8004.139.1 0.23 +0.0
126,259 + Xcc-8004.139.1 0.23 -0.8
126,259 + Xcc-8004.139.1 0.23 -1.1
126,259 + Xcc-8004.139.1 0.23 +1.0
126,260 - Xcc-8004.139.1 0.23 -0.0
126,260 - Xcc-8004.139.1 0.23 +2.1
126,260 - Xcc-8004.139.1 0.23 +4.3
126,260 - Xcc-8004.139.1 0.23 -0.3
126,260 - Xcc-8004.139.1 0.23 +0.4
126,260 - Xcc-8004.139.1 0.23 -0.2
126,260 - Xcc-8004.139.1 0.23 -1.2
126,260 - Xcc-8004.139.1 0.23 -0.5
126,260 - Xcc-8004.139.1 0.23 +0.7
126,260 - Xcc-8004.139.1 0.23 +0.2
126,260 - Xcc-8004.139.1 0.23 +0.1
126,260 - Xcc-8004.139.1 0.23 +0.6
126,260 - Xcc-8004.139.1 0.23 -1.7
126,260 - Xcc-8004.139.1 0.23 -0.7
126,376 + Xcc-8004.139.1 0.35 +0.1
126,377 - Xcc-8004.139.1 0.35 +1.1
126,377 - Xcc-8004.139.1 0.35 -0.2
126,412 + Xcc-8004.139.1 0.39 +0.5
126,412 + Xcc-8004.139.1 0.39 -0.4
126,412 + Xcc-8004.139.1 0.39 -1.3
126,412 + Xcc-8004.139.1 0.39 +0.1
126,412 + Xcc-8004.139.1 0.39 -0.9
126,412 + Xcc-8004.139.1 0.39 -2.1
126,413 - Xcc-8004.139.1 0.39 +0.4
126,413 - Xcc-8004.139.1 0.39 -2.1
126,413 - Xcc-8004.139.1 0.39 +0.7
126,413 - Xcc-8004.139.1 0.39 -0.2
126,413 - Xcc-8004.139.1 0.39 +1.7
126,413 - Xcc-8004.139.1 0.39 -0.2
126,601 + Xcc-8004.139.1 0.59 -0.8
126,680 - Xcc-8004.139.1 0.67 +0.1
127,009 + -1.2
127,010 - -0.3
127,241 - +1.5
127,241 - -0.6
127,298 + Xcc-8004.140.1 0.10 +0.6
127,299 - Xcc-8004.140.1 0.10 +2.5
127,299 - Xcc-8004.140.1 0.10 +0.7
127,409 + Xcc-8004.140.1 0.14 -0.9
127,410 - Xcc-8004.140.1 0.14 +0.4
127,410 - Xcc-8004.140.1 0.14 +0.8
127,720 - Xcc-8004.140.1 0.24 -1.2
127,949 + Xcc-8004.140.1 0.32 -0.9

Or see this region's nucleotide sequence