Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.136.1 and Xcc-8004.137.1 are separated by 299 nucleotides Xcc-8004.137.1 and Xcc-8004.138.1 overlap by 2 nucleotides Xcc-8004.138.1 and Xcc-8004.139.1 overlap by 1 nucleotides Xcc-8004.139.1 and Xcc-8004.140.1 are separated by 6 nucleotides
Xcc-8004.136.1: Xcc-8004.136.1 - FIG01210906: hypothetical protein, at 124,646 to 125,038
Xcc-8004.136.1
Xcc-8004.137.1: Xcc-8004.137.1 - FIG01209674: hypothetical protein, at 125,338 to 125,499
Xcc-8004.137.1
Xcc-8004.138.1: Xcc-8004.138.1 - FIG01211329: hypothetical protein, at 125,498 to 126,046
Xcc-8004.138.1
Xcc-8004.139.1: Xcc-8004.139.1 - Ku domain protein, at 126,046 to 126,987
Xcc-8004.139.1
Xcc-8004.140.1: Xcc-8004.140.1 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 126,994 to 129,999
Xcc-8004.140.1
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.503 kb on + strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.504 kb on - strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.644 kb on + strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.645 kb on - strand at 124.695 kb on + strand, within Xcc-8004.136.1 at 124.710 kb on + strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.711 kb on - strand, within Xcc-8004.136.1 at 124.862 kb on + strand, within Xcc-8004.136.1 at 124.862 kb on + strand, within Xcc-8004.136.1 at 124.863 kb on - strand, within Xcc-8004.136.1 at 124.863 kb on - strand, within Xcc-8004.136.1 at 124.864 kb on + strand, within Xcc-8004.136.1 at 124.865 kb on - strand, within Xcc-8004.136.1 at 124.865 kb on - strand, within Xcc-8004.136.1 at 124.886 kb on + strand, within Xcc-8004.136.1 at 125.037 kb on - strand at 125.037 kb on - strand at 125.037 kb on - strand at 125.064 kb on + strand at 125.065 kb on - strand at 125.065 kb on - strand at 125.088 kb on + strand at 125.088 kb on + strand at 125.089 kb on - strand at 125.089 kb on - strand at 125.089 kb on - strand at 125.207 kb on + strand at 125.208 kb on - strand at 125.208 kb on - strand at 125.208 kb on - strand at 125.239 kb on + strand at 125.239 kb on + strand at 125.239 kb on + strand at 125.240 kb on - strand at 125.252 kb on + strand at 125.252 kb on + strand at 125.253 kb on - strand at 125.339 kb on + strand at 125.339 kb on + strand at 125.370 kb on + strand, within Xcc-8004.137.1 at 125.370 kb on + strand, within Xcc-8004.137.1 at 125.426 kb on + strand, within Xcc-8004.137.1 at 125.426 kb on + strand, within Xcc-8004.137.1 at 125.427 kb on - strand, within Xcc-8004.137.1 at 125.427 kb on - strand, within Xcc-8004.137.1 at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.502 kb on + strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.503 kb on - strand at 125.611 kb on - strand, within Xcc-8004.138.1 at 125.732 kb on - strand, within Xcc-8004.138.1 at 125.751 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.777 kb on + strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.778 kb on - strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.846 kb on + strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 125.847 kb on - strand, within Xcc-8004.138.1 at 126.010 kb on + strand at 126.010 kb on + strand at 126.010 kb on + strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.011 kb on - strand at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.259 kb on + strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.260 kb on - strand, within Xcc-8004.139.1 at 126.376 kb on + strand, within Xcc-8004.139.1 at 126.377 kb on - strand, within Xcc-8004.139.1 at 126.377 kb on - strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.412 kb on + strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.413 kb on - strand, within Xcc-8004.139.1 at 126.601 kb on + strand, within Xcc-8004.139.1 at 126.680 kb on - strand, within Xcc-8004.139.1 at 127.009 kb on + strand at 127.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 124,503 + -0.6 124,503 + +1.2 124,503 + +0.6 124,503 + +0.8 124,503 + -1.0 124,503 + -1.7 124,503 + -1.6 124,504 - +1.1 124,504 - +0.9 124,504 - -0.7 124,504 - +0.4 124,644 + -0.3 124,644 + +0.7 124,644 + +0.5 124,644 + -0.8 124,644 + -0.0 124,645 - +1.2 124,645 - +0.5 124,645 - +0.1 124,645 - -1.2 124,695 + Xcc-8004.136.1 0.12 +1.0 124,710 + Xcc-8004.136.1 0.16 -0.5 124,711 - Xcc-8004.136.1 0.17 +0.7 124,711 - Xcc-8004.136.1 0.17 -1.1 124,711 - Xcc-8004.136.1 0.17 +0.4 124,711 - Xcc-8004.136.1 0.17 +0.1 124,862 + Xcc-8004.136.1 0.55 +1.3 124,862 + Xcc-8004.136.1 0.55 +0.2 124,863 - Xcc-8004.136.1 0.55 +1.0 124,863 - Xcc-8004.136.1 0.55 -2.3 124,864 + Xcc-8004.136.1 0.55 +0.4 124,865 - Xcc-8004.136.1 0.56 +1.3 124,865 - Xcc-8004.136.1 0.56 +1.2 124,886 + Xcc-8004.136.1 0.61 -1.7 125,037 - -0.4 125,037 - +0.5 125,037 - -0.8 125,064 + +1.1 125,065 - -0.2 125,065 - +0.9 125,088 + -1.0 125,088 + -0.4 125,089 - -0.0 125,089 - +1.2 125,089 - -0.8 125,207 + -0.3 125,208 - -1.1 125,208 - +0.1 125,208 - +1.1 125,239 + -0.6 125,239 + +0.8 125,239 + -0.3 125,240 - -0.5 125,252 + -0.9 125,252 + +0.8 125,253 - -1.1 125,339 + +0.2 125,339 + -0.6 125,370 + Xcc-8004.137.1 0.20 -2.0 125,370 + Xcc-8004.137.1 0.20 -0.3 125,426 + Xcc-8004.137.1 0.54 +0.2 125,426 + Xcc-8004.137.1 0.54 -0.5 125,427 - Xcc-8004.137.1 0.55 +1.2 125,427 - Xcc-8004.137.1 0.55 +0.3 125,502 + -0.0 125,502 + +0.1 125,502 + -0.8 125,502 + -2.3 125,502 + +1.6 125,502 + -0.7 125,502 + -0.6 125,502 + +0.2 125,502 + +0.6 125,502 + -1.5 125,502 + +0.6 125,502 + -1.1 125,502 + -0.2 125,502 + +0.0 125,502 + -0.8 125,502 + +1.8 125,503 - +1.3 125,503 - +0.2 125,503 - -0.6 125,503 - +0.3 125,503 - +0.9 125,503 - -0.3 125,503 - +0.3 125,503 - -1.7 125,503 - +0.2 125,503 - +0.1 125,503 - -0.0 125,503 - -0.1 125,503 - -0.1 125,611 - Xcc-8004.138.1 0.21 +0.6 125,732 - Xcc-8004.138.1 0.43 -0.1 125,751 + Xcc-8004.138.1 0.46 -0.9 125,777 + Xcc-8004.138.1 0.51 -1.1 125,777 + Xcc-8004.138.1 0.51 -0.3 125,777 + Xcc-8004.138.1 0.51 +0.5 125,777 + Xcc-8004.138.1 0.51 +1.4 125,778 - Xcc-8004.138.1 0.51 -1.8 125,778 - Xcc-8004.138.1 0.51 -0.5 125,778 - Xcc-8004.138.1 0.51 -1.5 125,778 - Xcc-8004.138.1 0.51 -1.6 125,778 - Xcc-8004.138.1 0.51 +0.7 125,846 + Xcc-8004.138.1 0.63 -0.2 125,846 + Xcc-8004.138.1 0.63 +0.6 125,846 + Xcc-8004.138.1 0.63 +0.9 125,846 + Xcc-8004.138.1 0.63 +0.8 125,846 + Xcc-8004.138.1 0.63 -1.3 125,846 + Xcc-8004.138.1 0.63 -1.0 125,847 - Xcc-8004.138.1 0.64 -0.1 125,847 - Xcc-8004.138.1 0.64 -0.5 125,847 - Xcc-8004.138.1 0.64 +0.9 125,847 - Xcc-8004.138.1 0.64 -0.8 126,010 + +0.2 126,010 + +1.0 126,010 + +0.5 126,011 - +0.3 126,011 - -0.7 126,011 - -0.9 126,011 - +0.5 126,259 + Xcc-8004.139.1 0.23 -0.5 126,259 + Xcc-8004.139.1 0.23 +0.8 126,259 + Xcc-8004.139.1 0.23 -1.2 126,259 + Xcc-8004.139.1 0.23 +0.6 126,259 + Xcc-8004.139.1 0.23 -0.5 126,259 + Xcc-8004.139.1 0.23 -1.6 126,259 + Xcc-8004.139.1 0.23 -0.3 126,259 + Xcc-8004.139.1 0.23 +0.5 126,259 + Xcc-8004.139.1 0.23 +1.3 126,259 + Xcc-8004.139.1 0.23 +0.0 126,259 + Xcc-8004.139.1 0.23 -0.8 126,259 + Xcc-8004.139.1 0.23 -1.1 126,259 + Xcc-8004.139.1 0.23 +1.0 126,260 - Xcc-8004.139.1 0.23 -0.0 126,260 - Xcc-8004.139.1 0.23 +2.1 126,260 - Xcc-8004.139.1 0.23 +4.3 126,260 - Xcc-8004.139.1 0.23 -0.3 126,260 - Xcc-8004.139.1 0.23 +0.4 126,260 - Xcc-8004.139.1 0.23 -0.2 126,260 - Xcc-8004.139.1 0.23 -1.2 126,260 - Xcc-8004.139.1 0.23 -0.5 126,260 - Xcc-8004.139.1 0.23 +0.7 126,260 - Xcc-8004.139.1 0.23 +0.2 126,260 - Xcc-8004.139.1 0.23 +0.1 126,260 - Xcc-8004.139.1 0.23 +0.6 126,260 - Xcc-8004.139.1 0.23 -1.7 126,260 - Xcc-8004.139.1 0.23 -0.7 126,376 + Xcc-8004.139.1 0.35 +0.1 126,377 - Xcc-8004.139.1 0.35 +1.1 126,377 - Xcc-8004.139.1 0.35 -0.2 126,412 + Xcc-8004.139.1 0.39 +0.5 126,412 + Xcc-8004.139.1 0.39 -0.4 126,412 + Xcc-8004.139.1 0.39 -1.3 126,412 + Xcc-8004.139.1 0.39 +0.1 126,412 + Xcc-8004.139.1 0.39 -0.9 126,412 + Xcc-8004.139.1 0.39 -2.1 126,413 - Xcc-8004.139.1 0.39 +0.4 126,413 - Xcc-8004.139.1 0.39 -2.1 126,413 - Xcc-8004.139.1 0.39 +0.7 126,413 - Xcc-8004.139.1 0.39 -0.2 126,413 - Xcc-8004.139.1 0.39 +1.7 126,413 - Xcc-8004.139.1 0.39 -0.2 126,601 + Xcc-8004.139.1 0.59 -0.8 126,680 - Xcc-8004.139.1 0.67 +0.1 127,009 + -1.2 127,010 - -0.3
Or see this region's nucleotide sequence