Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1181.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,115,421	-				+0.5
1,115,461	-				-1.5
1,115,628	-				-1.2
1,115,652	+				-2.3
1,115,799	-		Xcc-8004.1181.1	0.12	-0.3
1,115,801	+		Xcc-8004.1181.1	0.12	+0.3
1,115,802	-		Xcc-8004.1181.1	0.12	-0.8
1,116,147	+		Xcc-8004.1181.1	0.39	-0.8
1,116,642	+		Xcc-8004.1181.1	0.77	+0.3
1,116,642	+		Xcc-8004.1181.1	0.77	+0.5
1,116,786	+		Xcc-8004.1181.1	0.89	+0.6
1,116,787	-		Xcc-8004.1181.1	0.89	-0.3
1,116,787	-		Xcc-8004.1181.1	0.89	-1.3
1,116,787	-		Xcc-8004.1181.1	0.89	-1.1
1,116,787	-		Xcc-8004.1181.1	0.89	-0.2
1,116,787	-		Xcc-8004.1181.1	0.89	+2.2
1,116,787	-		Xcc-8004.1181.1	0.89	+0.7
1,116,787	-		Xcc-8004.1181.1	0.89	-0.3
1,116,787	-		Xcc-8004.1181.1	0.89	-0.3
1,116,831	+				-1.1
1,116,831	+				-0.0
1,116,831	+				+0.8
1,116,832	-				+0.4
1,116,832	-				+0.1
1,116,834	+				+1.4
1,116,835	-				-1.5
1,116,835	-				+1.9
1,116,835	-				-0.3
1,116,970	-				+1.8
1,116,995	+				+1.3
1,116,995	+				+1.3
1,116,996	-				+0.3
1,117,023	+				-0.6
1,117,023	+				-1.9
1,117,024	-				-1.2
1,117,029	-				-1.5
1,117,169	-				+1.0
1,117,259	-				+0.7
1,117,268	+				-0.0
1,117,268	+				-2.5
1,117,268	+				+1.5
1,117,268	+				-0.6
1,117,269	-				-0.4
1,117,269	-				-1.6
1,117,360	+				-0.5
1,117,360	+				+0.4
1,117,361	-				-0.2
1,117,361	-				+0.1
1,117,361	-				+0.6
1,117,361	-				+0.8
1,117,447	-				+0.8
1,117,447	-				-1.5
1,117,718	+		Xcc-8004.1183.1	0.13	+0.6
1,117,718	+		Xcc-8004.1183.1	0.13	+1.2