Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.115.1 and Xcc-8004.117.1 overlap by 4 nucleotides Xcc-8004.117.1 and Xcc-8004.118.1 are separated by 148 nucleotides
Xcc-8004.115.1: Xcc-8004.115.1 - FIG045085: Hypothetical protein, at 103,594 to 105,858
Xcc-8004.115.1
Xcc-8004.117.1: Xcc-8004.117.1 - FIG042594: DUF1550 domain-containing protein, at 105,855 to 107,036
Xcc-8004.117.1
Xcc-8004.118.1: Xcc-8004.118.1 - FIG037995: Hypothetical protein, at 107,185 to 108,081
Xcc-8004.118.1
Position (kb) 105
106
107
108 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 104.951 kb on + strand, within Xcc-8004.115.1 at 104.951 kb on + strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 104.952 kb on - strand, within Xcc-8004.115.1 at 105.058 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.116 kb on + strand, within Xcc-8004.115.1 at 105.117 kb on - strand, within Xcc-8004.115.1 at 105.317 kb on + strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.318 kb on - strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.592 kb on + strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.593 kb on - strand, within Xcc-8004.115.1 at 105.925 kb on + strand at 106.152 kb on + strand, within Xcc-8004.117.1 at 106.402 kb on + strand, within Xcc-8004.117.1 at 106.403 kb on - strand, within Xcc-8004.117.1 at 106.403 kb on - strand, within Xcc-8004.117.1 at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.246 kb on + strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.247 kb on - strand at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.324 kb on + strand, within Xcc-8004.118.1 at 107.325 kb on - strand, within Xcc-8004.118.1 at 107.882 kb on + strand, within Xcc-8004.118.1 at 107.882 kb on + strand, within Xcc-8004.118.1 at 107.883 kb on - strand, within Xcc-8004.118.1 at 107.924 kb on + strand, within Xcc-8004.118.1 at 107.925 kb on - strand, within Xcc-8004.118.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 104,951 + Xcc-8004.115.1 0.60 +0.2 104,951 + Xcc-8004.115.1 0.60 -0.0 104,952 - Xcc-8004.115.1 0.60 +0.6 104,952 - Xcc-8004.115.1 0.60 +0.6 104,952 - Xcc-8004.115.1 0.60 +0.7 105,058 + Xcc-8004.115.1 0.65 +0.7 105,116 + Xcc-8004.115.1 0.67 +0.9 105,116 + Xcc-8004.115.1 0.67 -1.2 105,116 + Xcc-8004.115.1 0.67 +0.9 105,117 - Xcc-8004.115.1 0.67 -1.7 105,317 + Xcc-8004.115.1 0.76 -0.1 105,318 - Xcc-8004.115.1 0.76 +0.2 105,318 - Xcc-8004.115.1 0.76 -0.5 105,318 - Xcc-8004.115.1 0.76 +1.6 105,318 - Xcc-8004.115.1 0.76 -1.0 105,318 - Xcc-8004.115.1 0.76 +0.9 105,592 + Xcc-8004.115.1 0.88 -1.8 105,592 + Xcc-8004.115.1 0.88 +0.6 105,592 + Xcc-8004.115.1 0.88 +0.7 105,592 + Xcc-8004.115.1 0.88 +0.4 105,593 - Xcc-8004.115.1 0.88 +0.5 105,593 - Xcc-8004.115.1 0.88 -0.5 105,593 - Xcc-8004.115.1 0.88 -0.9 105,593 - Xcc-8004.115.1 0.88 -0.3 105,593 - Xcc-8004.115.1 0.88 -0.6 105,925 + -0.2 106,152 + Xcc-8004.117.1 0.25 -0.7 106,402 + Xcc-8004.117.1 0.46 -0.9 106,403 - Xcc-8004.117.1 0.46 -0.9 106,403 - Xcc-8004.117.1 0.46 -0.6 107,246 + +0.7 107,246 + -0.5 107,246 + -0.6 107,246 + -1.2 107,246 + -1.3 107,247 - +0.9 107,247 - -0.6 107,247 - +0.0 107,247 - -2.9 107,324 + Xcc-8004.118.1 0.15 -0.7 107,324 + Xcc-8004.118.1 0.15 -0.3 107,324 + Xcc-8004.118.1 0.15 -1.4 107,324 + Xcc-8004.118.1 0.15 -1.6 107,325 - Xcc-8004.118.1 0.16 -0.4 107,882 + Xcc-8004.118.1 0.78 +0.3 107,882 + Xcc-8004.118.1 0.78 +0.5 107,883 - Xcc-8004.118.1 0.78 +0.5 107,924 + Xcc-8004.118.1 0.82 +0.8 107,925 - Xcc-8004.118.1 0.82 +1.2
Or see this region's nucleotide sequence