Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1109.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1107.1 and Xcc-8004.1108.1 overlap by 4 nucleotidesXcc-8004.1108.1 and Xcc-8004.1109.1 are separated by 141 nucleotidesXcc-8004.1109.1 and Xcc-8004.1110.1 are separated by 384 nucleotides Xcc-8004.1107.1: Xcc-8004.1107.1 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-), at 1,052,751 to 1,054,163 Xcc-8004.1107.1 Xcc-8004.1108.1: Xcc-8004.1108.1 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 1,054,160 to 1,054,759 Xcc-8004.1108.1 Xcc-8004.1109.1: Xcc-8004.1109.1 - FIG01211035: hypothetical protein, at 1,054,901 to 1,055,785 Xcc-8004.1109.1 Xcc-8004.1110.1: Xcc-8004.1110.1 - DedA protein, at 1,056,170 to 1,058,200 Xcc-8004.1110.1 Position (kb) 1054 1055 1056Strain fitness (log2 ratio) -3 -2 -1 0 1at 1054.052 kb on + strandat 1054.052 kb on + strandat 1054.052 kb on + strandat 1054.052 kb on + strandat 1054.052 kb on + strandat 1054.053 kb on - strandat 1054.053 kb on - strandat 1054.053 kb on - strandat 1054.373 kb on + strand, within Xcc-8004.1108.1at 1054.374 kb on - strand, within Xcc-8004.1108.1at 1054.915 kb on - strandat 1055.000 kb on + strand, within Xcc-8004.1109.1at 1055.000 kb on + strand, within Xcc-8004.1109.1at 1055.001 kb on - strand, within Xcc-8004.1109.1at 1055.001 kb on - strand, within Xcc-8004.1109.1at 1055.003 kb on + strand, within Xcc-8004.1109.1at 1055.094 kb on - strand, within Xcc-8004.1109.1at 1055.094 kb on - strand, within Xcc-8004.1109.1at 1055.094 kb on - strand, within Xcc-8004.1109.1at 1055.234 kb on + strand, within Xcc-8004.1109.1at 1055.234 kb on + strand, within Xcc-8004.1109.1at 1055.234 kb on + strand, within Xcc-8004.1109.1at 1055.235 kb on - strand, within Xcc-8004.1109.1at 1055.235 kb on - strand, within Xcc-8004.1109.1at 1055.235 kb on - strand, within Xcc-8004.1109.1at 1055.235 kb on - strand, within Xcc-8004.1109.1at 1055.235 kb on - strand, within Xcc-8004.1109.1at 1055.499 kb on - strand, within Xcc-8004.1109.1at 1055.579 kb on + strand, within Xcc-8004.1109.1at 1055.579 kb on + strand, within Xcc-8004.1109.1at 1055.579 kb on + strand, within Xcc-8004.1109.1at 1055.580 kb on - strand, within Xcc-8004.1109.1at 1055.580 kb on - strand, within Xcc-8004.1109.1at 1055.580 kb on - strand, within Xcc-8004.1109.1at 1055.580 kb on - strand, within Xcc-8004.1109.1at 1055.695 kb on + strand, within Xcc-8004.1109.1at 1055.695 kb on + strand, within Xcc-8004.1109.1at 1055.695 kb on + strand, within Xcc-8004.1109.1at 1055.695 kb on + strand, within Xcc-8004.1109.1at 1055.696 kb on - strand, within Xcc-8004.1109.1at 1055.696 kb on - strand, within Xcc-8004.1109.1at 1055.696 kb on - strand, within Xcc-8004.1109.1at 1055.696 kb on - strand, within Xcc-8004.1109.1at 1055.813 kb on + strandat 1055.907 kb on + strandat 1055.907 kb on + strandat 1055.908 kb on - strandat 1055.908 kb on - strandat 1055.908 kb on - strandat 1055.908 kb on - strandat 1055.940 kb on - strandat 1056.009 kb on + strandat 1056.010 kb on - strandat 1056.061 kb on - strandat 1056.420 kb on + strand, within Xcc-8004.1110.1at 1056.746 kb on - strand, within Xcc-8004.1110.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,054,052 + -1.2
1,054,052 + -0.2
1,054,052 + -1.5
1,054,052 + -1.5
1,054,052 + -0.3
1,054,053 - -2.8
1,054,053 - -1.5
1,054,053 - -1.1
1,054,373 + Xcc-8004.1108.1 0.35 +1.4
1,054,374 - Xcc-8004.1108.1 0.36 +0.6
1,054,915 - -0.1
1,055,000 + Xcc-8004.1109.1 0.11 +1.0
1,055,000 + Xcc-8004.1109.1 0.11 +0.9
1,055,001 - Xcc-8004.1109.1 0.11 -0.8
1,055,001 - Xcc-8004.1109.1 0.11 -1.1
1,055,003 + Xcc-8004.1109.1 0.12 +0.8
1,055,094 - Xcc-8004.1109.1 0.22 +0.2
1,055,094 - Xcc-8004.1109.1 0.22 +0.4
1,055,094 - Xcc-8004.1109.1 0.22 -1.6
1,055,234 + Xcc-8004.1109.1 0.38 +1.1
1,055,234 + Xcc-8004.1109.1 0.38 +0.8
1,055,234 + Xcc-8004.1109.1 0.38 +1.3
1,055,235 - Xcc-8004.1109.1 0.38 +0.8
1,055,235 - Xcc-8004.1109.1 0.38 -0.9
1,055,235 - Xcc-8004.1109.1 0.38 -0.6
1,055,235 - Xcc-8004.1109.1 0.38 -0.5
1,055,235 - Xcc-8004.1109.1 0.38 -2.5
1,055,499 - Xcc-8004.1109.1 0.68 -1.2
1,055,579 + Xcc-8004.1109.1 0.77 -0.1
1,055,579 + Xcc-8004.1109.1 0.77 -0.9
1,055,579 + Xcc-8004.1109.1 0.77 +0.8
1,055,580 - Xcc-8004.1109.1 0.77 +0.3
1,055,580 - Xcc-8004.1109.1 0.77 -0.4
1,055,580 - Xcc-8004.1109.1 0.77 +0.5
1,055,580 - Xcc-8004.1109.1 0.77 +0.9
1,055,695 + Xcc-8004.1109.1 0.90 +0.8
1,055,695 + Xcc-8004.1109.1 0.90 +0.4
1,055,695 + Xcc-8004.1109.1 0.90 -1.4
1,055,695 + Xcc-8004.1109.1 0.90 +0.9
1,055,696 - Xcc-8004.1109.1 0.90 +0.1
1,055,696 - Xcc-8004.1109.1 0.90 -0.5
1,055,696 - Xcc-8004.1109.1 0.90 +0.6
1,055,696 - Xcc-8004.1109.1 0.90 -0.3
1,055,813 + +1.0
1,055,907 + +1.6
1,055,907 + +0.6
1,055,908 - +0.5
1,055,908 - -0.2
1,055,908 - +0.9
1,055,908 - -0.8
1,055,940 - -0.8
1,056,009 + -0.6
1,056,010 - -1.0
1,056,061 - -0.1
1,056,420 + Xcc-8004.1110.1 0.12 +1.3
1,056,746 - Xcc-8004.1110.1 0.28 -0.5

Or see this region's nucleotide sequence