Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1010.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1008.1 and Xcc-8004.1009.1 are separated by 33 nucleotidesXcc-8004.1009.1 and Xcc-8004.1010.1 overlap by 1 nucleotidesXcc-8004.1010.1 and Xcc-8004.1012.1 are separated by 46 nucleotides Xcc-8004.1008.1: Xcc-8004.1008.1 - FIG01211317: hypothetical protein, at 953,427 to 954,122 Xcc-8004.1008.1 Xcc-8004.1009.1: Xcc-8004.1009.1 - Lysophospholipase L1 and related esterases, at 954,156 to 954,779 Xcc-8004.1009.1 Xcc-8004.1010.1: Xcc-8004.1010.1 - Aspartate aminotransferase (EC 2.6.1.1), at 954,779 to 956,050 Xcc-8004.1010.1 Xcc-8004.1012.1: Xcc-8004.1012.1 - hypothetical protein, at 956,097 to 956,879 Xcc-8004.1012.1 Position (kb) 954 955 956 957Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 953.801 kb on + strand, within Xcc-8004.1008.1at 953.964 kb on + strand, within Xcc-8004.1008.1at 953.964 kb on + strand, within Xcc-8004.1008.1at 953.964 kb on + strand, within Xcc-8004.1008.1at 954.019 kb on + strand, within Xcc-8004.1008.1at 954.020 kb on - strand, within Xcc-8004.1008.1at 954.022 kb on + strand, within Xcc-8004.1008.1at 954.022 kb on + strand, within Xcc-8004.1008.1at 954.022 kb on + strand, within Xcc-8004.1008.1at 954.023 kb on - strand, within Xcc-8004.1008.1at 954.026 kb on - strand, within Xcc-8004.1008.1at 954.026 kb on - strand, within Xcc-8004.1008.1at 954.026 kb on - strand, within Xcc-8004.1008.1at 954.031 kb on + strand, within Xcc-8004.1008.1at 954.158 kb on - strandat 954.208 kb on + strandat 954.208 kb on + strandat 954.209 kb on - strandat 954.209 kb on - strandat 954.209 kb on - strandat 954.209 kb on - strandat 954.477 kb on + strand, within Xcc-8004.1009.1at 954.477 kb on + strand, within Xcc-8004.1009.1at 954.477 kb on + strand, within Xcc-8004.1009.1at 954.662 kb on - strand, within Xcc-8004.1009.1at 954.730 kb on + strandat 954.730 kb on + strandat 954.731 kb on - strandat 954.751 kb on + strandat 954.752 kb on - strandat 955.038 kb on + strand, within Xcc-8004.1010.1at 955.039 kb on - strand, within Xcc-8004.1010.1at 955.039 kb on - strand, within Xcc-8004.1010.1at 955.392 kb on + strand, within Xcc-8004.1010.1at 955.393 kb on - strand, within Xcc-8004.1010.1at 955.407 kb on + strand, within Xcc-8004.1010.1at 955.408 kb on - strand, within Xcc-8004.1010.1at 955.408 kb on - strand, within Xcc-8004.1010.1at 955.483 kb on - strand, within Xcc-8004.1010.1at 955.599 kb on + strand, within Xcc-8004.1010.1at 955.599 kb on + strand, within Xcc-8004.1010.1at 955.602 kb on + strand, within Xcc-8004.1010.1at 955.602 kb on + strand, within Xcc-8004.1010.1at 955.782 kb on + strand, within Xcc-8004.1010.1at 955.783 kb on - strand, within Xcc-8004.1010.1at 955.831 kb on + strand, within Xcc-8004.1010.1at 955.831 kb on + strand, within Xcc-8004.1010.1at 955.832 kb on - strand, within Xcc-8004.1010.1at 955.832 kb on - strand, within Xcc-8004.1010.1at 955.832 kb on - strand, within Xcc-8004.1010.1at 955.834 kb on - strand, within Xcc-8004.1010.1at 956.050 kb on + strandat 956.051 kb on - strandat 956.051 kb on - strandat 956.051 kb on - strandat 956.051 kb on - strandat 956.066 kb on + strandat 956.067 kb on - strandat 956.067 kb on - strandat 956.067 kb on - strandat 956.096 kb on + strandat 956.096 kb on + strandat 956.097 kb on - strandat 956.187 kb on - strand, within Xcc-8004.1012.1at 956.289 kb on + strand, within Xcc-8004.1012.1at 956.452 kb on + strand, within Xcc-8004.1012.1at 956.452 kb on + strand, within Xcc-8004.1012.1at 956.453 kb on - strand, within Xcc-8004.1012.1at 956.472 kb on - strand, within Xcc-8004.1012.1at 956.496 kb on + strand, within Xcc-8004.1012.1at 956.497 kb on - strand, within Xcc-8004.1012.1at 956.527 kb on - strand, within Xcc-8004.1012.1at 956.567 kb on + strand, within Xcc-8004.1012.1at 956.568 kb on - strand, within Xcc-8004.1012.1at 956.570 kb on + strand, within Xcc-8004.1012.1at 956.570 kb on + strand, within Xcc-8004.1012.1at 956.570 kb on + strand, within Xcc-8004.1012.1at 956.611 kb on - strand, within Xcc-8004.1012.1at 956.681 kb on + strand, within Xcc-8004.1012.1at 956.682 kb on - strand, within Xcc-8004.1012.1at 956.682 kb on - strand, within Xcc-8004.1012.1at 956.682 kb on - strand, within Xcc-8004.1012.1at 956.683 kb on + strand, within Xcc-8004.1012.1at 956.683 kb on + strand, within Xcc-8004.1012.1at 956.684 kb on - strand, within Xcc-8004.1012.1at 956.684 kb on - strand, within Xcc-8004.1012.1at 956.684 kb on - strand, within Xcc-8004.1012.1at 956.684 kb on - strand, within Xcc-8004.1012.1at 956.684 kb on - strand, within Xcc-8004.1012.1at 956.891 kb on + strandat 956.891 kb on + strandat 956.892 kb on - strandat 956.895 kb on + strandat 956.895 kb on + strandat 956.896 kb on - strandat 956.896 kb on - strandat 956.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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953,801 + Xcc-8004.1008.1 0.54 +0.8
953,964 + Xcc-8004.1008.1 0.77 -1.0
953,964 + Xcc-8004.1008.1 0.77 +0.8
953,964 + Xcc-8004.1008.1 0.77 +1.4
954,019 + Xcc-8004.1008.1 0.85 +1.0
954,020 - Xcc-8004.1008.1 0.85 -0.0
954,022 + Xcc-8004.1008.1 0.85 -0.2
954,022 + Xcc-8004.1008.1 0.85 -0.1
954,022 + Xcc-8004.1008.1 0.85 -0.1
954,023 - Xcc-8004.1008.1 0.86 +0.6
954,026 - Xcc-8004.1008.1 0.86 +4.1
954,026 - Xcc-8004.1008.1 0.86 -0.5
954,026 - Xcc-8004.1008.1 0.86 -1.2
954,031 + Xcc-8004.1008.1 0.87 +1.1
954,158 - +0.2
954,208 + +0.9
954,208 + +2.1
954,209 - +0.9
954,209 - +0.1
954,209 - -0.3
954,209 - -1.6
954,477 + Xcc-8004.1009.1 0.51 -0.7
954,477 + Xcc-8004.1009.1 0.51 -1.2
954,477 + Xcc-8004.1009.1 0.51 +0.5
954,662 - Xcc-8004.1009.1 0.81 +1.3
954,730 + -0.3
954,730 + +0.4
954,731 - -0.6
954,751 + +1.1
954,752 - -0.6
955,038 + Xcc-8004.1010.1 0.20 -0.7
955,039 - Xcc-8004.1010.1 0.20 -0.4
955,039 - Xcc-8004.1010.1 0.20 -0.9
955,392 + Xcc-8004.1010.1 0.48 +1.1
955,393 - Xcc-8004.1010.1 0.48 -0.1
955,407 + Xcc-8004.1010.1 0.49 -0.2
955,408 - Xcc-8004.1010.1 0.49 +0.7
955,408 - Xcc-8004.1010.1 0.49 -0.3
955,483 - Xcc-8004.1010.1 0.55 +0.1
955,599 + Xcc-8004.1010.1 0.64 -1.2
955,599 + Xcc-8004.1010.1 0.64 +0.1
955,602 + Xcc-8004.1010.1 0.65 -0.0
955,602 + Xcc-8004.1010.1 0.65 +1.4
955,782 + Xcc-8004.1010.1 0.79 -0.8
955,783 - Xcc-8004.1010.1 0.79 +0.1
955,831 + Xcc-8004.1010.1 0.83 -0.7
955,831 + Xcc-8004.1010.1 0.83 -0.6
955,832 - Xcc-8004.1010.1 0.83 -0.5
955,832 - Xcc-8004.1010.1 0.83 -0.6
955,832 - Xcc-8004.1010.1 0.83 -0.4
955,834 - Xcc-8004.1010.1 0.83 +0.4
956,050 + -1.0
956,051 - -0.4
956,051 - -1.7
956,051 - +1.2
956,051 - -1.1
956,066 + -2.3
956,067 - -0.4
956,067 - +0.2
956,067 - +0.1
956,096 + -0.2
956,096 + +1.0
956,097 - +1.5
956,187 - Xcc-8004.1012.1 0.11 +0.1
956,289 + Xcc-8004.1012.1 0.25 -0.7
956,452 + Xcc-8004.1012.1 0.45 -0.7
956,452 + Xcc-8004.1012.1 0.45 -0.7
956,453 - Xcc-8004.1012.1 0.45 +0.7
956,472 - Xcc-8004.1012.1 0.48 +0.7
956,496 + Xcc-8004.1012.1 0.51 +1.1
956,497 - Xcc-8004.1012.1 0.51 +0.7
956,527 - Xcc-8004.1012.1 0.55 +0.7
956,567 + Xcc-8004.1012.1 0.60 -0.5
956,568 - Xcc-8004.1012.1 0.60 -0.7
956,570 + Xcc-8004.1012.1 0.60 +1.3
956,570 + Xcc-8004.1012.1 0.60 +0.3
956,570 + Xcc-8004.1012.1 0.60 +0.8
956,611 - Xcc-8004.1012.1 0.66 +0.4
956,681 + Xcc-8004.1012.1 0.75 -0.0
956,682 - Xcc-8004.1012.1 0.75 -0.3
956,682 - Xcc-8004.1012.1 0.75 -1.9
956,682 - Xcc-8004.1012.1 0.75 +0.3
956,683 + Xcc-8004.1012.1 0.75 -0.9
956,683 + Xcc-8004.1012.1 0.75 +0.4
956,684 - Xcc-8004.1012.1 0.75 -1.0
956,684 - Xcc-8004.1012.1 0.75 -0.7
956,684 - Xcc-8004.1012.1 0.75 +0.9
956,684 - Xcc-8004.1012.1 0.75 -1.8
956,684 - Xcc-8004.1012.1 0.75 -0.2
956,891 + -0.1
956,891 + -0.6
956,892 - -1.5
956,895 + +1.1
956,895 + -1.6
956,896 - +0.7
956,896 - -0.8
956,988 - -1.1

Or see this region's nucleotide sequence