Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06478

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06477 and H281DRAFT_06478 are separated by 186 nucleotidesH281DRAFT_06478 and H281DRAFT_06479 are separated by 73 nucleotides H281DRAFT_06477: H281DRAFT_06477 - transcriptional regulator, AraC family, at 13,665 to 14,684 _06477 H281DRAFT_06478: H281DRAFT_06478 - succinylornithine aminotransferase apoenzyme, at 14,871 to 16,106 _06478 H281DRAFT_06479: H281DRAFT_06479 - arginine succinyltransferase, at 16,180 to 17,238 _06479 Position (kb) 14 15 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1at 14.410 kb on - strand, within H281DRAFT_06477at 14.433 kb on + strand, within H281DRAFT_06477at 14.785 kb on + strandat 14.812 kb on + strandat 14.834 kb on + strandat 14.834 kb on + strandat 14.840 kb on + strandat 15.333 kb on + strand, within H281DRAFT_06478at 15.381 kb on + strand, within H281DRAFT_06478at 15.579 kb on + strand, within H281DRAFT_06478at 15.717 kb on + strand, within H281DRAFT_06478at 16.621 kb on + strand, within H281DRAFT_06479at 16.888 kb on + strand, within H281DRAFT_06479

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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14,410 - H281DRAFT_06477 0.73 +1.6
14,433 + H281DRAFT_06477 0.75 -0.2
14,785 + +0.2
14,812 + +0.5
14,834 + -0.4
14,834 + -0.3
14,840 + -1.4
15,333 + H281DRAFT_06478 0.37 +0.5
15,381 + H281DRAFT_06478 0.41 +1.5
15,579 + H281DRAFT_06478 0.57 +0.4
15,717 + H281DRAFT_06478 0.68 +0.5
16,621 + H281DRAFT_06479 0.42 -0.5
16,888 + H281DRAFT_06479 0.67 -3.3

Or see this region's nucleotide sequence