Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06378

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06377 and H281DRAFT_06378 are separated by 76 nucleotidesH281DRAFT_06378 and H281DRAFT_06379 are separated by 38 nucleotidesH281DRAFT_06379 and H281DRAFT_06380 overlap by 4 nucleotides H281DRAFT_06377: H281DRAFT_06377 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 49,821 to 50,570 _06377 H281DRAFT_06378: H281DRAFT_06378 - D-galactonate transporter, at 50,647 to 51,975 _06378 H281DRAFT_06379: H281DRAFT_06379 - transketolase subunit A, at 52,014 to 52,859 _06379 H281DRAFT_06380: H281DRAFT_06380 - transketolase subunit B, at 52,856 to 53,857 _06380 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.741 kb on + strandat 49.741 kb on + strandat 49.741 kb on + strandat 49.752 kb on + strandat 50.105 kb on - strand, within H281DRAFT_06377at 50.114 kb on - strand, within H281DRAFT_06377at 50.172 kb on + strand, within H281DRAFT_06377at 50.173 kb on - strand, within H281DRAFT_06377at 50.173 kb on - strand, within H281DRAFT_06377at 50.175 kb on - strand, within H281DRAFT_06377at 50.175 kb on - strand, within H281DRAFT_06377at 50.189 kb on - strand, within H281DRAFT_06377at 51.082 kb on + strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.161 kb on + strand, within H281DRAFT_06378at 51.469 kb on + strand, within H281DRAFT_06378at 52.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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49,741 + -0.2
49,741 + -0.2
49,741 + +0.9
49,752 + +0.3
50,105 - H281DRAFT_06377 0.38 +0.4
50,114 - H281DRAFT_06377 0.39 -2.3
50,172 + H281DRAFT_06377 0.47 +0.8
50,173 - H281DRAFT_06377 0.47 -0.2
50,173 - H281DRAFT_06377 0.47 -0.2
50,175 - H281DRAFT_06377 0.47 +0.3
50,175 - H281DRAFT_06377 0.47 +0.8
50,189 - H281DRAFT_06377 0.49 +1.0
51,082 + H281DRAFT_06378 0.33 -0.3
51,092 - H281DRAFT_06378 0.33 -0.2
51,092 - H281DRAFT_06378 0.33 -0.5
51,161 + H281DRAFT_06378 0.39 +2.1
51,469 + H281DRAFT_06378 0.62 +0.0
52,088 - +0.6

Or see this region's nucleotide sequence