Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06377

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06376 and H281DRAFT_06377 are separated by 209 nucleotidesH281DRAFT_06377 and H281DRAFT_06378 are separated by 76 nucleotides H281DRAFT_06376: H281DRAFT_06376 - transcriptional regulator, LysR family, at 48,715 to 49,611 _06376 H281DRAFT_06377: H281DRAFT_06377 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 49,821 to 50,570 _06377 H281DRAFT_06378: H281DRAFT_06378 - D-galactonate transporter, at 50,647 to 51,975 _06378 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.129 kb on + strand, within H281DRAFT_06376at 49.130 kb on - strand, within H281DRAFT_06376at 49.378 kb on + strand, within H281DRAFT_06376at 49.638 kb on - strandat 49.741 kb on + strandat 49.741 kb on + strandat 49.741 kb on + strandat 49.752 kb on + strandat 50.105 kb on - strand, within H281DRAFT_06377at 50.114 kb on - strand, within H281DRAFT_06377at 50.172 kb on + strand, within H281DRAFT_06377at 50.173 kb on - strand, within H281DRAFT_06377at 50.173 kb on - strand, within H281DRAFT_06377at 50.175 kb on - strand, within H281DRAFT_06377at 50.175 kb on - strand, within H281DRAFT_06377at 50.189 kb on - strand, within H281DRAFT_06377at 51.082 kb on + strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.092 kb on - strand, within H281DRAFT_06378at 51.161 kb on + strand, within H281DRAFT_06378at 51.469 kb on + strand, within H281DRAFT_06378

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
49,129 + H281DRAFT_06376 0.46 +0.5
49,130 - H281DRAFT_06376 0.46 +0.8
49,378 + H281DRAFT_06376 0.74 +0.7
49,638 - +0.6
49,741 + -0.2
49,741 + -0.2
49,741 + +0.9
49,752 + +0.3
50,105 - H281DRAFT_06377 0.38 +0.4
50,114 - H281DRAFT_06377 0.39 -2.3
50,172 + H281DRAFT_06377 0.47 +0.8
50,173 - H281DRAFT_06377 0.47 -0.2
50,173 - H281DRAFT_06377 0.47 -0.2
50,175 - H281DRAFT_06377 0.47 +0.3
50,175 - H281DRAFT_06377 0.47 +0.8
50,189 - H281DRAFT_06377 0.49 +1.0
51,082 + H281DRAFT_06378 0.33 -0.3
51,092 - H281DRAFT_06378 0.33 -0.2
51,092 - H281DRAFT_06378 0.33 -0.5
51,161 + H281DRAFT_06378 0.39 +2.1
51,469 + H281DRAFT_06378 0.62 +0.0

Or see this region's nucleotide sequence