Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06256

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06254 and H281DRAFT_06255 are separated by 3 nucleotidesH281DRAFT_06255 and H281DRAFT_06256 are separated by 28 nucleotidesH281DRAFT_06256 and H281DRAFT_06257 overlap by 4 nucleotides H281DRAFT_06254: H281DRAFT_06254 - dephospho-CoA kinase, at 35,697 to 36,308 _06254 H281DRAFT_06255: H281DRAFT_06255 - leader peptidase (prepilin peptidase) / N-methyltransferase, at 36,312 to 37,265 _06255 H281DRAFT_06256: H281DRAFT_06256 - type IV pilus assembly protein PilC, at 37,294 to 38,523 _06256 H281DRAFT_06257: H281DRAFT_06257 - type IV pilus assembly protein PilB, at 38,520 to 39,818 _06257 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 36.653 kb on - strand, within H281DRAFT_06255at 36.901 kb on + strand, within H281DRAFT_06255at 36.901 kb on + strand, within H281DRAFT_06255at 36.901 kb on + strand, within H281DRAFT_06255at 36.901 kb on + strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.902 kb on - strand, within H281DRAFT_06255at 36.983 kb on - strand, within H281DRAFT_06255at 36.983 kb on - strand, within H281DRAFT_06255at 37.074 kb on - strand, within H281DRAFT_06255at 37.074 kb on - strand, within H281DRAFT_06255at 37.273 kb on - strandat 37.295 kb on + strandat 37.295 kb on + strandat 37.296 kb on - strandat 37.296 kb on - strandat 37.317 kb on + strandat 37.328 kb on + strandat 37.328 kb on + strandat 37.328 kb on + strandat 37.328 kb on + strandat 37.329 kb on - strandat 37.329 kb on - strandat 37.329 kb on - strandat 37.329 kb on - strandat 37.329 kb on - strandat 37.732 kb on + strand, within H281DRAFT_06256at 37.745 kb on - strand, within H281DRAFT_06256at 37.805 kb on + strand, within H281DRAFT_06256at 37.806 kb on - strand, within H281DRAFT_06256at 37.806 kb on - strand, within H281DRAFT_06256at 37.867 kb on + strand, within H281DRAFT_06256at 37.867 kb on + strand, within H281DRAFT_06256at 37.868 kb on - strand, within H281DRAFT_06256at 37.870 kb on + strand, within H281DRAFT_06256at 37.870 kb on + strand, within H281DRAFT_06256at 37.870 kb on + strand, within H281DRAFT_06256at 37.984 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.994 kb on + strand, within H281DRAFT_06256at 37.995 kb on - strand, within H281DRAFT_06256at 37.995 kb on - strand, within H281DRAFT_06256at 37.995 kb on - strand, within H281DRAFT_06256at 37.995 kb on - strand, within H281DRAFT_06256at 37.995 kb on - strand, within H281DRAFT_06256at 38.063 kb on - strand, within H281DRAFT_06256at 38.063 kb on - strand, within H281DRAFT_06256at 38.114 kb on + strand, within H281DRAFT_06256at 38.114 kb on + strand, within H281DRAFT_06256at 38.115 kb on - strand, within H281DRAFT_06256at 38.115 kb on - strand, within H281DRAFT_06256at 38.115 kb on - strand, within H281DRAFT_06256at 38.115 kb on - strand, within H281DRAFT_06256at 38.115 kb on - strand, within H281DRAFT_06256at 38.245 kb on + strand, within H281DRAFT_06256at 38.245 kb on + strand, within H281DRAFT_06256at 38.326 kb on - strand, within H281DRAFT_06256at 38.442 kb on + strandat 38.442 kb on + strandat 38.443 kb on - strandat 38.443 kb on - strandat 38.508 kb on + strandat 38.514 kb on + strandat 38.517 kb on + strandat 38.517 kb on + strandat 38.694 kb on - strand, within H281DRAFT_06257at 38.694 kb on - strand, within H281DRAFT_06257at 38.762 kb on - strand, within H281DRAFT_06257at 39.036 kb on + strand, within H281DRAFT_06257at 39.217 kb on + strand, within H281DRAFT_06257at 39.217 kb on + strand, within H281DRAFT_06257at 39.217 kb on + strand, within H281DRAFT_06257at 39.218 kb on - strand, within H281DRAFT_06257at 39.218 kb on - strand, within H281DRAFT_06257at 39.372 kb on + strand, within H281DRAFT_06257at 39.372 kb on + strand, within H281DRAFT_06257at 39.415 kb on + strand, within H281DRAFT_06257

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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36,653 - H281DRAFT_06255 0.36 -0.6
36,901 + H281DRAFT_06255 0.62 -0.4
36,901 + H281DRAFT_06255 0.62 -0.7
36,901 + H281DRAFT_06255 0.62 -4.1
36,901 + H281DRAFT_06255 0.62 -0.2
36,902 - H281DRAFT_06255 0.62 +0.2
36,902 - H281DRAFT_06255 0.62 -0.0
36,902 - H281DRAFT_06255 0.62 -0.2
36,902 - H281DRAFT_06255 0.62 -0.6
36,902 - H281DRAFT_06255 0.62 -0.4
36,902 - H281DRAFT_06255 0.62 +0.1
36,902 - H281DRAFT_06255 0.62 +0.5
36,983 - H281DRAFT_06255 0.70 +0.3
36,983 - H281DRAFT_06255 0.70 +0.5
37,074 - H281DRAFT_06255 0.80 -0.7
37,074 - H281DRAFT_06255 0.80 -0.7
37,273 - +0.3
37,295 + +0.6
37,295 + +0.3
37,296 - +0.9
37,296 - -2.3
37,317 + +0.7
37,328 + +0.8
37,328 + -1.3
37,328 + -1.7
37,328 + +0.3
37,329 - +0.5
37,329 - +0.0
37,329 - +0.3
37,329 - +1.1
37,329 - +0.2
37,732 + H281DRAFT_06256 0.36 +0.9
37,745 - H281DRAFT_06256 0.37 +1.9
37,805 + H281DRAFT_06256 0.42 -1.1
37,806 - H281DRAFT_06256 0.42 +0.8
37,806 - H281DRAFT_06256 0.42 -0.7
37,867 + H281DRAFT_06256 0.47 -0.4
37,867 + H281DRAFT_06256 0.47 +1.5
37,868 - H281DRAFT_06256 0.47 +0.5
37,870 + H281DRAFT_06256 0.47 +0.0
37,870 + H281DRAFT_06256 0.47 +0.7
37,870 + H281DRAFT_06256 0.47 +0.1
37,984 + H281DRAFT_06256 0.56 +0.8
37,994 + H281DRAFT_06256 0.57 -1.1
37,994 + H281DRAFT_06256 0.57 +1.9
37,994 + H281DRAFT_06256 0.57 +0.8
37,994 + H281DRAFT_06256 0.57 +0.3
37,994 + H281DRAFT_06256 0.57 +0.8
37,994 + H281DRAFT_06256 0.57 -2.2
37,994 + H281DRAFT_06256 0.57 -0.8
37,995 - H281DRAFT_06256 0.57 -0.7
37,995 - H281DRAFT_06256 0.57 +0.1
37,995 - H281DRAFT_06256 0.57 +0.0
37,995 - H281DRAFT_06256 0.57 +0.4
37,995 - H281DRAFT_06256 0.57 -1.4
38,063 - H281DRAFT_06256 0.63 +0.5
38,063 - H281DRAFT_06256 0.63 +0.2
38,114 + H281DRAFT_06256 0.67 +0.2
38,114 + H281DRAFT_06256 0.67 -0.3
38,115 - H281DRAFT_06256 0.67 +1.5
38,115 - H281DRAFT_06256 0.67 +0.7
38,115 - H281DRAFT_06256 0.67 +0.3
38,115 - H281DRAFT_06256 0.67 +0.7
38,115 - H281DRAFT_06256 0.67 +1.0
38,245 + H281DRAFT_06256 0.77 +1.6
38,245 + H281DRAFT_06256 0.77 +1.4
38,326 - H281DRAFT_06256 0.84 -3.2
38,442 + +0.7
38,442 + -0.6
38,443 - -0.3
38,443 - -0.8
38,508 + -0.6
38,514 + -0.2
38,517 + +0.3
38,517 + +1.4
38,694 - H281DRAFT_06257 0.13 +1.4
38,694 - H281DRAFT_06257 0.13 +0.9
38,762 - H281DRAFT_06257 0.19 +0.0
39,036 + H281DRAFT_06257 0.40 -0.5
39,217 + H281DRAFT_06257 0.54 -0.0
39,217 + H281DRAFT_06257 0.54 +0.4
39,217 + H281DRAFT_06257 0.54 +1.3
39,218 - H281DRAFT_06257 0.54 -0.0
39,218 - H281DRAFT_06257 0.54 +0.2
39,372 + H281DRAFT_06257 0.66 +0.8
39,372 + H281DRAFT_06257 0.66 +0.3
39,415 + H281DRAFT_06257 0.69 +0.8

Or see this region's nucleotide sequence