Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06175 and H281DRAFT_06176 are separated by 210 nucleotides H281DRAFT_06176 and H281DRAFT_06177 are separated by 75 nucleotides H281DRAFT_06177 and H281DRAFT_06178 are separated by 31 nucleotides H281DRAFT_06178 and H281DRAFT_06179 are separated by 55 nucleotides H281DRAFT_06179 and H281DRAFT_06180 are separated by 84 nucleotides
H281DRAFT_06175: H281DRAFT_06175 - DNA repair exonuclease, at 66,312 to 66,905
_06175
H281DRAFT_06176: H281DRAFT_06176 - exonuclease SbcC, at 67,116 to 69,437
_06176
H281DRAFT_06177: H281DRAFT_06177 - hypothetical protein, at 69,513 to 69,698
_06177
H281DRAFT_06178: H281DRAFT_06178 - hypothetical protein, at 69,730 to 69,936
_06178
H281DRAFT_06179: H281DRAFT_06179 - hypothetical protein, at 69,992 to 70,210
_06179
H281DRAFT_06180: H281DRAFT_06180 - hypothetical protein, at 70,295 to 70,678
_06180
Position (kb) 67
68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 66.529 kb on + strand, within H281DRAFT_06175 at 66.542 kb on + strand, within H281DRAFT_06175 at 67.043 kb on - strand at 67.330 kb on - strand at 67.344 kb on + strand at 67.623 kb on + strand, within H281DRAFT_06176 at 67.624 kb on - strand, within H281DRAFT_06176 at 68.137 kb on + strand, within H281DRAFT_06176 at 68.336 kb on + strand, within H281DRAFT_06176 at 69.252 kb on + strand at 69.253 kb on - strand at 69.534 kb on + strand, within H281DRAFT_06177 at 69.534 kb on + strand, within H281DRAFT_06177 at 69.534 kb on + strand, within H281DRAFT_06177 at 69.534 kb on + strand, within H281DRAFT_06177 at 69.534 kb on + strand, within H281DRAFT_06177 at 69.534 kb on + strand, within H281DRAFT_06177 at 69.535 kb on - strand, within H281DRAFT_06177 at 69.599 kb on + strand, within H281DRAFT_06177 at 69.603 kb on + strand, within H281DRAFT_06177 at 69.603 kb on + strand, within H281DRAFT_06177 at 69.603 kb on + strand, within H281DRAFT_06177 at 69.604 kb on - strand, within H281DRAFT_06177 at 69.604 kb on - strand, within H281DRAFT_06177 at 69.604 kb on - strand, within H281DRAFT_06177 at 69.723 kb on + strand at 69.765 kb on + strand, within H281DRAFT_06178 at 70.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 66,529 + H281DRAFT_06175 0.37 +0.7 66,542 + H281DRAFT_06175 0.39 +0.5 67,043 - +1.1 67,330 - +0.4 67,344 + -1.6 67,623 + H281DRAFT_06176 0.22 +1.2 67,624 - H281DRAFT_06176 0.22 +0.2 68,137 + H281DRAFT_06176 0.44 +1.0 68,336 + H281DRAFT_06176 0.53 +0.8 69,252 + -0.2 69,253 - +0.6 69,534 + H281DRAFT_06177 0.11 -0.3 69,534 + H281DRAFT_06177 0.11 -0.2 69,534 + H281DRAFT_06177 0.11 +0.6 69,534 + H281DRAFT_06177 0.11 -0.3 69,534 + H281DRAFT_06177 0.11 -0.6 69,534 + H281DRAFT_06177 0.11 -0.4 69,535 - H281DRAFT_06177 0.12 -0.7 69,599 + H281DRAFT_06177 0.46 +0.4 69,603 + H281DRAFT_06177 0.48 -1.8 69,603 + H281DRAFT_06177 0.48 +0.3 69,603 + H281DRAFT_06177 0.48 -0.5 69,604 - H281DRAFT_06177 0.49 -0.7 69,604 - H281DRAFT_06177 0.49 +0.1 69,604 - H281DRAFT_06177 0.49 -1.4 69,723 + +0.0 69,765 + H281DRAFT_06178 0.17 +2.6 70,309 + -0.7
Or see this region's nucleotide sequence