Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06132 and H281DRAFT_06133 are separated by 17 nucleotides H281DRAFT_06133 and H281DRAFT_06134 are separated by 462 nucleotides
H281DRAFT_06132: H281DRAFT_06132 - acetyl-CoA C-acetyltransferase, at 20,711 to 21,898
_06132
H281DRAFT_06133: H281DRAFT_06133 - hypothetical protein, at 21,916 to 23,049
_06133
H281DRAFT_06134: H281DRAFT_06134 - hypothetical protein, at 23,512 to 24,057
_06134
H281DRAFT_06135: H281DRAFT_06135 - hypothetical protein, at 23,878 to 24,783
_06135
Position (kb) 21
22
23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 21.042 kb on + strand, within H281DRAFT_06132 at 21.084 kb on - strand, within H281DRAFT_06132 at 21.142 kb on + strand, within H281DRAFT_06132 at 21.142 kb on + strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.170 kb on + strand, within H281DRAFT_06132 at 21.171 kb on - strand, within H281DRAFT_06132 at 21.360 kb on + strand, within H281DRAFT_06132 at 21.360 kb on + strand, within H281DRAFT_06132 at 21.364 kb on + strand, within H281DRAFT_06132 at 21.365 kb on - strand, within H281DRAFT_06132 at 21.451 kb on + strand, within H281DRAFT_06132 at 21.452 kb on - strand, within H281DRAFT_06132 at 21.553 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.561 kb on - strand, within H281DRAFT_06132 at 21.640 kb on - strand, within H281DRAFT_06132 at 21.640 kb on - strand at 21.787 kb on + strand at 21.920 kb on + strand at 21.920 kb on + strand at 21.921 kb on - strand at 21.924 kb on + strand at 21.924 kb on + strand at 21.925 kb on - strand at 22.105 kb on + strand, within H281DRAFT_06133 at 22.106 kb on - strand, within H281DRAFT_06133 at 22.106 kb on - strand, within H281DRAFT_06133 at 22.107 kb on + strand, within H281DRAFT_06133 at 22.107 kb on + strand, within H281DRAFT_06133 at 22.108 kb on - strand, within H281DRAFT_06133 at 22.108 kb on - strand, within H281DRAFT_06133 at 22.108 kb on - strand, within H281DRAFT_06133 at 22.161 kb on + strand, within H281DRAFT_06133 at 22.161 kb on + strand, within H281DRAFT_06133 at 22.161 kb on + strand, within H281DRAFT_06133 at 22.161 kb on + strand, within H281DRAFT_06133 at 22.162 kb on - strand, within H281DRAFT_06133 at 22.162 kb on - strand, within H281DRAFT_06133 at 22.170 kb on - strand, within H281DRAFT_06133 at 22.211 kb on - strand, within H281DRAFT_06133 at 22.380 kb on + strand, within H281DRAFT_06133 at 22.381 kb on - strand, within H281DRAFT_06133 at 22.381 kb on - strand, within H281DRAFT_06133 at 22.381 kb on - strand, within H281DRAFT_06133 at 22.393 kb on + strand, within H281DRAFT_06133 at 22.394 kb on - strand, within H281DRAFT_06133 at 22.639 kb on - strand, within H281DRAFT_06133 at 22.665 kb on + strand, within H281DRAFT_06133 at 22.700 kb on - strand, within H281DRAFT_06133 at 22.700 kb on - strand, within H281DRAFT_06133 at 22.937 kb on - strand at 22.937 kb on - strand at 22.966 kb on + strand at 23.047 kb on + strand at 23.083 kb on + strand at 23.113 kb on + strand at 23.113 kb on + strand at 23.114 kb on - strand at 23.315 kb on + strand at 23.316 kb on - strand at 23.497 kb on + strand at 23.497 kb on + strand at 23.619 kb on + strand, within H281DRAFT_06134 at 23.699 kb on - strand at 23.699 kb on - strand, within H281DRAFT_06134 at 23.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 21,042 + H281DRAFT_06132 0.28 -1.4 21,084 - H281DRAFT_06132 0.31 +0.4 21,142 + H281DRAFT_06132 0.36 -1.0 21,142 + H281DRAFT_06132 0.36 +0.2 21,143 - H281DRAFT_06132 0.36 +1.2 21,143 - H281DRAFT_06132 0.36 +0.6 21,143 - H281DRAFT_06132 0.36 -1.6 21,143 - H281DRAFT_06132 0.36 -1.0 21,170 + H281DRAFT_06132 0.39 +0.2 21,171 - H281DRAFT_06132 0.39 -1.0 21,360 + H281DRAFT_06132 0.55 -0.2 21,360 + H281DRAFT_06132 0.55 -0.0 21,364 + H281DRAFT_06132 0.55 -1.6 21,365 - H281DRAFT_06132 0.55 +1.0 21,451 + H281DRAFT_06132 0.62 -0.4 21,452 - H281DRAFT_06132 0.62 +0.4 21,553 + H281DRAFT_06132 0.71 +0.6 21,560 + H281DRAFT_06132 0.71 -0.6 21,560 + H281DRAFT_06132 0.71 -0.3 21,560 + H281DRAFT_06132 0.71 -0.4 21,561 - H281DRAFT_06132 0.72 +0.9 21,640 - H281DRAFT_06132 0.78 +0.8 21,640 - -0.6 21,787 + +0.5 21,920 + -0.2 21,920 + +0.3 21,921 - +0.7 21,924 + -0.4 21,924 + -3.0 21,925 - -0.8 22,105 + H281DRAFT_06133 0.17 -0.3 22,106 - H281DRAFT_06133 0.17 +0.8 22,106 - H281DRAFT_06133 0.17 +0.8 22,107 + H281DRAFT_06133 0.17 +0.2 22,107 + H281DRAFT_06133 0.17 +0.2 22,108 - H281DRAFT_06133 0.17 +0.1 22,108 - H281DRAFT_06133 0.17 -1.3 22,108 - H281DRAFT_06133 0.17 +2.0 22,161 + H281DRAFT_06133 0.22 -0.1 22,161 + H281DRAFT_06133 0.22 -0.2 22,161 + H281DRAFT_06133 0.22 +0.4 22,161 + H281DRAFT_06133 0.22 -2.3 22,162 - H281DRAFT_06133 0.22 +0.4 22,162 - H281DRAFT_06133 0.22 -2.4 22,170 - H281DRAFT_06133 0.22 +0.2 22,211 - H281DRAFT_06133 0.26 -0.3 22,380 + H281DRAFT_06133 0.41 +0.1 22,381 - H281DRAFT_06133 0.41 -0.3 22,381 - H281DRAFT_06133 0.41 -1.2 22,381 - H281DRAFT_06133 0.41 +0.2 22,393 + H281DRAFT_06133 0.42 +0.5 22,394 - H281DRAFT_06133 0.42 +0.0 22,639 - H281DRAFT_06133 0.64 -0.4 22,665 + H281DRAFT_06133 0.66 -2.0 22,700 - H281DRAFT_06133 0.69 +0.1 22,700 - H281DRAFT_06133 0.69 -2.2 22,937 - +0.9 22,937 - +0.4 22,966 + -0.0 23,047 + -0.4 23,083 + -0.2 23,113 + +0.3 23,113 + +0.5 23,114 - -0.8 23,315 + +0.1 23,316 - -0.3 23,497 + +0.1 23,497 + +0.3 23,619 + H281DRAFT_06134 0.20 +0.8 23,699 - +2.4 23,699 - H281DRAFT_06134 0.34 +1.5 23,879 + -1.5
Or see this region's nucleotide sequence