Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06089

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06088 and H281DRAFT_06089 are separated by 191 nucleotidesH281DRAFT_06089 and H281DRAFT_06090 are separated by 391 nucleotides H281DRAFT_06088: H281DRAFT_06088 - Nucleoside-diphosphate-sugar epimerase, at 106,092 to 106,730 _06088 H281DRAFT_06089: H281DRAFT_06089 - hypothetical protein, at 106,922 to 107,164 _06089 H281DRAFT_06090: H281DRAFT_06090 - N-ethylmaleimide reductase, at 107,556 to 108,770 _06090 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1at 106.135 kb on + strandat 106.283 kb on + strand, within H281DRAFT_06088at 106.284 kb on - strand, within H281DRAFT_06088at 106.465 kb on - strand, within H281DRAFT_06088at 106.519 kb on - strand, within H281DRAFT_06088at 106.548 kb on - strand, within H281DRAFT_06088at 106.848 kb on - strandat 106.996 kb on + strand, within H281DRAFT_06089at 107.229 kb on + strandat 107.230 kb on - strandat 107.230 kb on - strandat 107.290 kb on - strandat 107.451 kb on + strandat 107.452 kb on - strandat 107.461 kb on - strandat 107.649 kb on + strandat 107.650 kb on - strandat 107.716 kb on + strand, within H281DRAFT_06090at 107.717 kb on - strand, within H281DRAFT_06090at 107.739 kb on + strand, within H281DRAFT_06090at 107.742 kb on + strand, within H281DRAFT_06090at 108.082 kb on - strand, within H281DRAFT_06090at 108.097 kb on - strand, within H281DRAFT_06090

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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106,135 + -0.6
106,283 + H281DRAFT_06088 0.30 -1.0
106,284 - H281DRAFT_06088 0.30 +0.6
106,465 - H281DRAFT_06088 0.58 -0.1
106,519 - H281DRAFT_06088 0.67 -0.0
106,548 - H281DRAFT_06088 0.71 -0.6
106,848 - -0.2
106,996 + H281DRAFT_06089 0.30 +0.2
107,229 + +0.5
107,230 - -0.3
107,230 - -0.5
107,290 - +1.0
107,451 + +0.4
107,452 - -1.2
107,461 - +0.8
107,649 + -3.5
107,650 - +0.2
107,716 + H281DRAFT_06090 0.13 +0.2
107,717 - H281DRAFT_06090 0.13 +1.6
107,739 + H281DRAFT_06090 0.15 -0.4
107,742 + H281DRAFT_06090 0.15 -1.2
108,082 - H281DRAFT_06090 0.43 +0.9
108,097 - H281DRAFT_06090 0.45 +1.0

Or see this region's nucleotide sequence