Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05914 and H281DRAFT_05915 are separated by 81 nucleotides H281DRAFT_05915 and H281DRAFT_05916 are separated by 265 nucleotides H281DRAFT_05916 and H281DRAFT_05917 are separated by 53 nucleotides H281DRAFT_05917 and H281DRAFT_05918 are separated by 45 nucleotides
H281DRAFT_05914: H281DRAFT_05914 - hypothetical protein, at 48,065 to 48,724
_05914
H281DRAFT_05915: H281DRAFT_05915 - hypothetical protein, at 48,806 to 49,144
_05915
H281DRAFT_05916: H281DRAFT_05916 - hypothetical protein, at 49,410 to 49,718
_05916
H281DRAFT_05917: H281DRAFT_05917 - Glycine zipper 2TM domain, at 49,772 to 50,023
_05917
H281DRAFT_05918: H281DRAFT_05918 - Fumarylacetoacetate (FAA) hydrolase family protein, at 50,069 to 51,247
_05918
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-2
-1
0
1 at 48.076 kb on + strand at 48.579 kb on + strand, within H281DRAFT_05914 at 48.580 kb on - strand, within H281DRAFT_05914 at 48.708 kb on + strand at 48.999 kb on + strand, within H281DRAFT_05915 at 49.183 kb on - strand at 49.183 kb on - strand at 49.307 kb on + strand at 49.353 kb on - strand at 49.432 kb on + strand at 49.433 kb on - strand at 49.435 kb on + strand at 49.436 kb on - strand at 49.567 kb on - strand, within H281DRAFT_05916 at 49.567 kb on - strand, within H281DRAFT_05916 at 49.763 kb on + strand at 49.764 kb on - strand at 49.893 kb on - strand, within H281DRAFT_05917 at 50.022 kb on - strand at 50.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 48,076 + -1.6 48,579 + H281DRAFT_05914 0.78 +0.6 48,580 - H281DRAFT_05914 0.78 +0.5 48,708 + -1.6 48,999 + H281DRAFT_05915 0.57 -0.0 49,183 - -0.1 49,183 - +0.4 49,307 + -0.3 49,353 - +0.6 49,432 + -0.2 49,433 - -0.9 49,435 + -2.5 49,436 - +0.7 49,567 - H281DRAFT_05916 0.51 +0.7 49,567 - H281DRAFT_05916 0.51 -0.2 49,763 + +1.4 49,764 - +1.3 49,893 - H281DRAFT_05917 0.48 +0.3 50,022 - +0.3 50,070 + +0.5
Or see this region's nucleotide sequence