Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05869

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05867 and H281DRAFT_05868 are separated by 47 nucleotidesH281DRAFT_05868 and H281DRAFT_05869 are separated by 40 nucleotidesH281DRAFT_05869 and H281DRAFT_05870 are separated by 266 nucleotides H281DRAFT_05867: H281DRAFT_05867 - uncharacterized peroxidase-related enzyme, at 4,833 to 5,369 _05867 H281DRAFT_05868: H281DRAFT_05868 - 2-Methylisocitrate lyase, PEP mutase family, at 5,417 to 6,241 _05868 H281DRAFT_05869: H281DRAFT_05869 - 2-iminobutanoate/2-iminopropanoate deaminase, at 6,282 to 6,674 _05869 H281DRAFT_05870: H281DRAFT_05870 - amino acid ABC transporter substrate-binding protein, PAAT family, at 6,941 to 7,792 _05870 Position (kb) 6 7Strain fitness (log2 ratio) -1 0 1at 5.963 kb on + strand, within H281DRAFT_05868at 6.007 kb on - strand, within H281DRAFT_05868at 6.036 kb on + strand, within H281DRAFT_05868at 6.252 kb on + strandat 6.571 kb on - strand, within H281DRAFT_05869at 6.653 kb on - strandat 6.653 kb on - strandat 6.736 kb on + strandat 6.834 kb on + strandat 7.126 kb on + strand, within H281DRAFT_05870at 7.127 kb on - strand, within H281DRAFT_05870at 7.640 kb on + strand, within H281DRAFT_05870at 7.641 kb on - strand, within H281DRAFT_05870

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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5,963 + H281DRAFT_05868 0.66 -0.4
6,007 - H281DRAFT_05868 0.72 -1.1
6,036 + H281DRAFT_05868 0.75 -0.2
6,252 + -0.2
6,571 - H281DRAFT_05869 0.74 +0.5
6,653 - -0.2
6,653 - -0.7
6,736 + -0.5
6,834 + +0.8
7,126 + H281DRAFT_05870 0.22 -0.2
7,127 - H281DRAFT_05870 0.22 +0.7
7,640 + H281DRAFT_05870 0.82 +0.4
7,641 - H281DRAFT_05870 0.82 +0.1

Or see this region's nucleotide sequence