Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05679 and H281DRAFT_05680 are separated by 1 nucleotides H281DRAFT_05680 and H281DRAFT_05681 are separated by 212 nucleotides H281DRAFT_05681 and H281DRAFT_05682 are separated by 151 nucleotides
H281DRAFT_05679: H281DRAFT_05679 - SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase, at 95,388 to 96,230
_05679
H281DRAFT_05680: H281DRAFT_05680 - hypothetical protein, at 96,232 to 96,786
_05680
H281DRAFT_05681: H281DRAFT_05681 - transcriptional regulator, TetR family, at 96,999 to 97,667
_05681
H281DRAFT_05682: H281DRAFT_05682 - Sugar phosphate permease, at 97,819 to 99,102
_05682
Position (kb) 96
97
98 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 96.020 kb on + strand, within H281DRAFT_05679 at 96.020 kb on + strand, within H281DRAFT_05679 at 96.021 kb on - strand, within H281DRAFT_05679 at 96.245 kb on - strand at 96.249 kb on + strand at 96.299 kb on + strand, within H281DRAFT_05680 at 96.300 kb on - strand, within H281DRAFT_05680 at 96.300 kb on - strand, within H281DRAFT_05680 at 96.342 kb on + strand, within H281DRAFT_05680 at 96.342 kb on + strand, within H281DRAFT_05680 at 96.342 kb on + strand, within H281DRAFT_05680 at 96.343 kb on - strand, within H281DRAFT_05680 at 96.393 kb on - strand, within H281DRAFT_05680 at 96.393 kb on - strand, within H281DRAFT_05680 at 96.393 kb on - strand, within H281DRAFT_05680 at 96.432 kb on - strand, within H281DRAFT_05680 at 96.517 kb on - strand, within H281DRAFT_05680 at 96.518 kb on + strand, within H281DRAFT_05680 at 96.518 kb on + strand, within H281DRAFT_05680 at 96.519 kb on - strand, within H281DRAFT_05680 at 96.519 kb on - strand, within H281DRAFT_05680 at 96.519 kb on - strand, within H281DRAFT_05680 at 96.535 kb on + strand, within H281DRAFT_05680 at 96.536 kb on - strand, within H281DRAFT_05680 at 96.564 kb on + strand, within H281DRAFT_05680 at 96.565 kb on - strand, within H281DRAFT_05680 at 96.718 kb on + strand, within H281DRAFT_05680 at 96.719 kb on - strand, within H281DRAFT_05680 at 96.827 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.960 kb on - strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.962 kb on - strand at 97.035 kb on - strand at 97.087 kb on + strand, within H281DRAFT_05681 at 97.088 kb on - strand, within H281DRAFT_05681 at 97.105 kb on + strand, within H281DRAFT_05681 at 97.105 kb on + strand, within H281DRAFT_05681 at 97.176 kb on + strand, within H281DRAFT_05681 at 97.177 kb on - strand, within H281DRAFT_05681 at 97.328 kb on - strand, within H281DRAFT_05681 at 97.328 kb on - strand, within H281DRAFT_05681 at 97.384 kb on + strand, within H281DRAFT_05681 at 97.417 kb on + strand, within H281DRAFT_05681 at 97.418 kb on - strand, within H281DRAFT_05681 at 97.456 kb on + strand, within H281DRAFT_05681 at 97.634 kb on + strand at 97.770 kb on + strand at 97.841 kb on + strand at 97.841 kb on + strand at 98.009 kb on + strand, within H281DRAFT_05682 at 98.010 kb on - strand, within H281DRAFT_05682 at 98.010 kb on - strand, within H281DRAFT_05682 at 98.011 kb on + strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.018 kb on + strand, within H281DRAFT_05682 at 98.323 kb on + strand, within H281DRAFT_05682 at 98.431 kb on + strand, within H281DRAFT_05682 at 98.432 kb on - strand, within H281DRAFT_05682 at 98.621 kb on - strand, within H281DRAFT_05682
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 96,020 + H281DRAFT_05679 0.75 +0.2 96,020 + H281DRAFT_05679 0.75 +0.3 96,021 - H281DRAFT_05679 0.75 +0.9 96,245 - -1.1 96,249 + +0.6 96,299 + H281DRAFT_05680 0.12 +0.1 96,300 - H281DRAFT_05680 0.12 -1.1 96,300 - H281DRAFT_05680 0.12 +0.9 96,342 + H281DRAFT_05680 0.20 -0.2 96,342 + H281DRAFT_05680 0.20 -1.7 96,342 + H281DRAFT_05680 0.20 +0.2 96,343 - H281DRAFT_05680 0.20 +0.9 96,393 - H281DRAFT_05680 0.29 -0.2 96,393 - H281DRAFT_05680 0.29 +1.3 96,393 - H281DRAFT_05680 0.29 +0.3 96,432 - H281DRAFT_05680 0.36 -0.3 96,517 - H281DRAFT_05680 0.51 +1.4 96,518 + H281DRAFT_05680 0.52 +0.1 96,518 + H281DRAFT_05680 0.52 +0.2 96,519 - H281DRAFT_05680 0.52 -1.5 96,519 - H281DRAFT_05680 0.52 +0.7 96,519 - H281DRAFT_05680 0.52 +0.3 96,535 + H281DRAFT_05680 0.55 +0.3 96,536 - H281DRAFT_05680 0.55 +0.7 96,564 + H281DRAFT_05680 0.60 +0.2 96,565 - H281DRAFT_05680 0.60 -0.1 96,718 + H281DRAFT_05680 0.88 -1.1 96,719 - H281DRAFT_05680 0.88 -4.8 96,827 + +1.9 96,959 + +1.0 96,959 + +0.8 96,959 + +0.1 96,959 + -0.1 96,960 - -0.2 96,961 + +0.1 96,961 + +0.8 96,961 + +1.5 96,961 + +0.8 96,962 - +0.7 96,962 - +0.7 96,962 - +0.0 96,962 - -0.3 97,035 - -0.3 97,087 + H281DRAFT_05681 0.13 -0.2 97,088 - H281DRAFT_05681 0.13 +1.7 97,105 + H281DRAFT_05681 0.16 -1.0 97,105 + H281DRAFT_05681 0.16 -2.7 97,176 + H281DRAFT_05681 0.26 -1.2 97,177 - H281DRAFT_05681 0.27 -1.7 97,328 - H281DRAFT_05681 0.49 -2.2 97,328 - H281DRAFT_05681 0.49 -0.3 97,384 + H281DRAFT_05681 0.58 -0.4 97,417 + H281DRAFT_05681 0.62 +0.2 97,418 - H281DRAFT_05681 0.63 -0.6 97,456 + H281DRAFT_05681 0.68 +0.7 97,634 + +1.0 97,770 + -3.0 97,841 + -0.9 97,841 + +0.0 98,009 + H281DRAFT_05682 0.15 -0.8 98,010 - H281DRAFT_05682 0.15 -0.2 98,010 - H281DRAFT_05682 0.15 +0.5 98,011 + H281DRAFT_05682 0.15 +0.5 98,012 - H281DRAFT_05682 0.15 -0.3 98,012 - H281DRAFT_05682 0.15 -2.1 98,012 - H281DRAFT_05682 0.15 -1.7 98,018 + H281DRAFT_05682 0.15 +0.6 98,323 + H281DRAFT_05682 0.39 -0.5 98,431 + H281DRAFT_05682 0.48 +1.0 98,432 - H281DRAFT_05682 0.48 +1.0 98,621 - H281DRAFT_05682 0.62 +0.6
Or see this region's nucleotide sequence