Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05363

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotidesH281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotides H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914 _05363 H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419 _05364 Position (kb) 116 117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.366 kb on - strandat 115.392 kb on - strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.509 kb on - strandat 115.565 kb on + strandat 115.566 kb on - strandat 115.566 kb on - strandat 115.568 kb on + strandat 115.568 kb on + strandat 115.570 kb on + strandat 115.659 kb on + strandat 115.660 kb on - strandat 115.660 kb on - strandat 115.662 kb on + strandat 115.663 kb on - strandat 115.669 kb on - strandat 115.669 kb on - strandat 115.677 kb on + strandat 115.678 kb on - strandat 115.751 kb on - strand, within H281DRAFT_05362at 115.751 kb on - strand, within H281DRAFT_05362at 115.754 kb on - strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.817 kb on + strand, within H281DRAFT_05362at 115.818 kb on - strand, within H281DRAFT_05362at 115.818 kb on - strandat 115.898 kb on + strand, within H281DRAFT_05362at 115.898 kb on + strand, within H281DRAFT_05362at 115.899 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 116.184 kb on + strand, within H281DRAFT_05362at 116.185 kb on - strand, within H281DRAFT_05362at 116.385 kb on + strandat 116.385 kb on + strandat 116.385 kb on + strandat 116.386 kb on - strandat 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.912 kb on + strandat 116.912 kb on + strandat 116.913 kb on - strandat 116.916 kb on + strandat 116.917 kb on - strandat 116.917 kb on - strandat 116.917 kb on - strandat 117.236 kb on - strand, within H281DRAFT_05364at 117.236 kb on - strand, within H281DRAFT_05364at 117.364 kb on + strand, within H281DRAFT_05364at 117.365 kb on - strand, within H281DRAFT_05364at 117.365 kb on - strand, within H281DRAFT_05364at 117.451 kb on + strand, within H281DRAFT_05364at 117.452 kb on - strand, within H281DRAFT_05364at 117.452 kb on - strand, within H281DRAFT_05364at 117.637 kb on + strand, within H281DRAFT_05364at 117.638 kb on - strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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115,366 - +0.7
115,392 - -0.2
115,403 + -0.1
115,403 + -1.0
115,403 + +0.2
115,404 - +0.6
115,404 - -0.2
115,404 - +0.2
115,509 - -0.5
115,565 + +0.3
115,566 - +0.3
115,566 - +0.1
115,568 + +0.6
115,568 + +0.1
115,570 + +0.3
115,659 + -2.1
115,660 - +1.1
115,660 - +0.6
115,662 + +0.9
115,663 - +0.6
115,669 - +0.3
115,669 - +0.7
115,677 + -0.1
115,678 - +0.6
115,751 - H281DRAFT_05362 0.16 +0.2
115,751 - H281DRAFT_05362 0.16 +0.5
115,754 - H281DRAFT_05362 0.16 +0.2
115,774 + H281DRAFT_05362 0.19 -0.5
115,774 + H281DRAFT_05362 0.19 +0.3
115,775 - H281DRAFT_05362 0.19 -0.6
115,775 - H281DRAFT_05362 0.19 -0.5
115,779 + H281DRAFT_05362 0.20 +0.3
115,779 + H281DRAFT_05362 0.20 +0.2
115,817 + H281DRAFT_05362 0.25 +0.7
115,818 - H281DRAFT_05362 0.25 +1.0
115,818 - +3.7
115,898 + H281DRAFT_05362 0.37 +0.1
115,898 + H281DRAFT_05362 0.37 -0.1
115,899 - H281DRAFT_05362 0.37 +0.8
115,969 - H281DRAFT_05362 0.47 +0.4
115,969 - H281DRAFT_05362 0.47 +0.3
116,184 + H281DRAFT_05362 0.79 -0.3
116,185 - H281DRAFT_05362 0.79 +0.4
116,385 + +0.1
116,385 + +0.1
116,385 + +0.7
116,386 - +0.6
116,432 + H281DRAFT_05363 0.12 +0.2
116,432 + H281DRAFT_05363 0.12 +0.4
116,432 + H281DRAFT_05363 0.12 +0.0
116,433 - H281DRAFT_05363 0.12 +0.7
116,433 - H281DRAFT_05363 0.12 +0.0
116,433 - H281DRAFT_05363 0.12 +0.2
116,433 - H281DRAFT_05363 0.12 +1.4
116,433 - H281DRAFT_05363 0.12 +0.6
116,433 - H281DRAFT_05363 0.12 -0.1
116,433 - H281DRAFT_05363 0.12 +0.3
116,433 - H281DRAFT_05363 0.12 -0.4
116,433 - H281DRAFT_05363 0.12 +0.3
116,912 + +0.5
116,912 + -0.9
116,913 - +0.0
116,916 + -0.0
116,917 - +0.4
116,917 - +0.3
116,917 - -0.8
117,236 - H281DRAFT_05364 0.21 +0.9
117,236 - H281DRAFT_05364 0.21 +0.7
117,364 + H281DRAFT_05364 0.29 +0.9
117,365 - H281DRAFT_05364 0.29 +1.7
117,365 - H281DRAFT_05364 0.29 -2.0
117,451 + H281DRAFT_05364 0.35 +0.5
117,452 - H281DRAFT_05364 0.35 -1.2
117,452 - H281DRAFT_05364 0.35 +0.3
117,637 + H281DRAFT_05364 0.47 +0.7
117,638 - H281DRAFT_05364 0.48 -0.0
117,747 + H281DRAFT_05364 0.55 -0.3
117,747 + H281DRAFT_05364 0.55 +0.7
117,754 + H281DRAFT_05364 0.55 +0.3
117,754 + H281DRAFT_05364 0.55 -1.6
117,754 + H281DRAFT_05364 0.55 -1.5
117,754 + H281DRAFT_05364 0.55 +0.7

Or see this region's nucleotide sequence