Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05265 and H281DRAFT_05266 are separated by 400 nucleotides H281DRAFT_05266 and H281DRAFT_05267 are separated by 11 nucleotides H281DRAFT_05267 and H281DRAFT_05268 are separated by 171 nucleotides
H281DRAFT_05265: H281DRAFT_05265 - hypothetical protein, at 7,029 to 8,192
_05265
H281DRAFT_05266: H281DRAFT_05266 - hypothetical protein, at 8,593 to 8,931
_05266
H281DRAFT_05267: H281DRAFT_05267 - 3-hydroxypropanoate dehydrogenase, at 8,943 to 9,527
_05267
H281DRAFT_05268: H281DRAFT_05268 - Alkylated DNA repair dioxygenase AlkB, at 9,699 to 10,313
_05268
Position (kb)
8
9 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 8.101 kb on - strand at 8.170 kb on - strand at 8.192 kb on + strand at 8.193 kb on - strand at 8.284 kb on - strand at 8.484 kb on - strand at 8.723 kb on - strand, within H281DRAFT_05266 at 8.911 kb on + strand at 8.912 kb on - strand at 9.143 kb on - strand, within H281DRAFT_05267 at 9.154 kb on - strand, within H281DRAFT_05267 at 9.154 kb on - strand, within H281DRAFT_05267 at 9.476 kb on - strand at 9.476 kb on - strand at 9.531 kb on - strand at 9.583 kb on - strand at 9.648 kb on + strand at 9.649 kb on - strand at 9.651 kb on + strand at 9.652 kb on - strand at 9.699 kb on - strand at 9.699 kb on - strand at 9.710 kb on - strand at 9.821 kb on + strand, within H281DRAFT_05268 at 9.821 kb on + strand, within H281DRAFT_05268 at 9.831 kb on - strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.901 kb on - strand, within H281DRAFT_05268
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 8,101 - +0.0 8,170 - -0.0 8,192 + +0.8 8,193 - -0.2 8,284 - -0.0 8,484 - +0.4 8,723 - H281DRAFT_05266 0.38 +1.7 8,911 + -2.0 8,912 - -0.5 9,143 - H281DRAFT_05267 0.34 -2.3 9,154 - H281DRAFT_05267 0.36 -0.8 9,154 - H281DRAFT_05267 0.36 +1.9 9,476 - -0.1 9,476 - +0.2 9,531 - -1.6 9,583 - -0.3 9,648 + -0.1 9,649 - +0.6 9,651 + -0.3 9,652 - +0.8 9,699 - -0.2 9,699 - +2.9 9,710 - +0.7 9,821 + H281DRAFT_05268 0.20 -0.4 9,821 + H281DRAFT_05268 0.20 -0.7 9,831 - H281DRAFT_05268 0.21 -1.4 9,894 + H281DRAFT_05268 0.32 +0.9 9,894 + H281DRAFT_05268 0.32 +0.4 9,894 + H281DRAFT_05268 0.32 -0.5 9,894 + H281DRAFT_05268 0.32 -0.0 9,901 - H281DRAFT_05268 0.33 -0.4
Or see this region's nucleotide sequence