Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05236

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05235 and H281DRAFT_05236 are separated by 269 nucleotidesH281DRAFT_05236 and H281DRAFT_05237 are separated by 48 nucleotidesH281DRAFT_05237 and H281DRAFT_05238 are separated by 144 nucleotides H281DRAFT_05235: H281DRAFT_05235 - hypothetical protein, at 202,035 to 203,072 _05235 H281DRAFT_05236: H281DRAFT_05236 - MFS transporter, MHS family, alpha-ketoglutarate permease, at 203,342 to 204,646 _05236 H281DRAFT_05237: H281DRAFT_05237 - hypothetical protein, at 204,695 to 204,916 _05237 H281DRAFT_05238: H281DRAFT_05238 - Glycosyltransferases involved in cell wall biogenesis, at 205,061 to 206,188 _05238 Position (kb) 203 204 205Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 202.375 kb on + strand, within H281DRAFT_05235at 202.384 kb on + strand, within H281DRAFT_05235at 202.385 kb on - strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.458 kb on + strand, within H281DRAFT_05235at 202.459 kb on - strand, within H281DRAFT_05235at 202.544 kb on + strand, within H281DRAFT_05235at 202.544 kb on + strandat 202.551 kb on - strand, within H281DRAFT_05235at 202.640 kb on - strandat 202.798 kb on - strand, within H281DRAFT_05235at 202.842 kb on + strand, within H281DRAFT_05235at 202.924 kb on + strand, within H281DRAFT_05235at 202.936 kb on + strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.937 kb on - strand, within H281DRAFT_05235at 202.942 kb on + strand, within H281DRAFT_05235at 202.943 kb on - strand, within H281DRAFT_05235at 202.943 kb on - strand, within H281DRAFT_05235at 203.036 kb on - strandat 203.089 kb on + strandat 203.115 kb on - strandat 203.180 kb on + strandat 203.450 kb on + strandat 203.450 kb on + strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.451 kb on - strandat 203.474 kb on + strand, within H281DRAFT_05236at 203.474 kb on + strand, within H281DRAFT_05236at 203.475 kb on - strand, within H281DRAFT_05236at 203.510 kb on - strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.777 kb on + strand, within H281DRAFT_05236at 203.778 kb on - strand, within H281DRAFT_05236at 203.778 kb on - strand, within H281DRAFT_05236at 203.779 kb on + strand, within H281DRAFT_05236at 203.831 kb on + strand, within H281DRAFT_05236at 203.953 kb on - strand, within H281DRAFT_05236at 203.973 kb on - strand, within H281DRAFT_05236at 204.116 kb on - strand, within H281DRAFT_05236at 204.128 kb on + strand, within H281DRAFT_05236at 204.129 kb on - strand, within H281DRAFT_05236at 204.129 kb on - strand, within H281DRAFT_05236at 204.129 kb on - strand, within H281DRAFT_05236at 204.129 kb on - strand, within H281DRAFT_05236at 204.140 kb on + strand, within H281DRAFT_05236at 204.140 kb on + strand, within H281DRAFT_05236at 204.210 kb on - strand, within H281DRAFT_05236at 204.392 kb on + strand, within H281DRAFT_05236at 204.393 kb on - strand, within H281DRAFT_05236at 204.394 kb on + strand, within H281DRAFT_05236at 204.467 kb on + strand, within H281DRAFT_05236at 204.467 kb on + strand, within H281DRAFT_05236at 204.468 kb on - strand, within H281DRAFT_05236at 204.468 kb on - strand, within H281DRAFT_05236at 204.485 kb on - strand, within H281DRAFT_05236at 204.506 kb on + strand, within H281DRAFT_05236at 204.551 kb on + strandat 204.551 kb on + strandat 204.551 kb on + strandat 204.557 kb on + strandat 204.557 kb on + strandat 204.558 kb on - strandat 204.644 kb on + strandat 204.957 kb on + strandat 204.990 kb on + strandat 204.990 kb on + strandat 204.990 kb on + strandat 204.991 kb on - strandat 205.016 kb on + strandat 205.272 kb on + strand, within H281DRAFT_05238at 205.273 kb on - strand, within H281DRAFT_05238at 205.296 kb on + strand, within H281DRAFT_05238at 205.303 kb on - strand, within H281DRAFT_05238at 205.365 kb on - strand, within H281DRAFT_05238at 205.536 kb on + strand, within H281DRAFT_05238at 205.536 kb on + strand, within H281DRAFT_05238at 205.536 kb on + strand, within H281DRAFT_05238at 205.537 kb on - strand, within H281DRAFT_05238at 205.548 kb on + strand, within H281DRAFT_05238at 205.548 kb on + strand, within H281DRAFT_05238

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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202,375 + H281DRAFT_05235 0.33 -1.8
202,384 + H281DRAFT_05235 0.34 -1.6
202,385 - H281DRAFT_05235 0.34 -0.2
202,458 + H281DRAFT_05235 0.41 +0.2
202,458 + H281DRAFT_05235 0.41 -0.5
202,458 + H281DRAFT_05235 0.41 -0.9
202,459 - H281DRAFT_05235 0.41 -1.6
202,544 + H281DRAFT_05235 0.49 -2.2
202,544 + -1.4
202,551 - H281DRAFT_05235 0.50 -0.1
202,640 - -1.0
202,798 - H281DRAFT_05235 0.74 -0.6
202,842 + H281DRAFT_05235 0.78 +0.4
202,924 + H281DRAFT_05235 0.86 -3.0
202,936 + H281DRAFT_05235 0.87 -1.1
202,937 - H281DRAFT_05235 0.87 +0.8
202,937 - H281DRAFT_05235 0.87 -1.9
202,937 - H281DRAFT_05235 0.87 -1.2
202,942 + H281DRAFT_05235 0.87 -0.1
202,943 - H281DRAFT_05235 0.87 -0.3
202,943 - H281DRAFT_05235 0.87 -0.6
203,036 - +0.1
203,089 + -1.2
203,115 - +0.9
203,180 + -0.7
203,450 + -2.5
203,450 + -1.5
203,451 - -0.1
203,451 - -1.5
203,451 - -1.8
203,474 + H281DRAFT_05236 0.10 -2.1
203,474 + H281DRAFT_05236 0.10 -4.9
203,475 - H281DRAFT_05236 0.10 -1.8
203,510 - H281DRAFT_05236 0.13 -2.5
203,777 + H281DRAFT_05236 0.33 -4.9
203,777 + H281DRAFT_05236 0.33 -2.5
203,777 + H281DRAFT_05236 0.33 -2.5
203,778 - H281DRAFT_05236 0.33 -2.0
203,778 - H281DRAFT_05236 0.33 -5.7
203,779 + H281DRAFT_05236 0.33 -1.5
203,831 + H281DRAFT_05236 0.37 -1.5
203,953 - H281DRAFT_05236 0.47 -2.9
203,973 - H281DRAFT_05236 0.48 -4.2
204,116 - H281DRAFT_05236 0.59 -2.2
204,128 + H281DRAFT_05236 0.60 -5.0
204,129 - H281DRAFT_05236 0.60 -1.7
204,129 - H281DRAFT_05236 0.60 -3.1
204,129 - H281DRAFT_05236 0.60 -1.2
204,129 - H281DRAFT_05236 0.60 -3.6
204,140 + H281DRAFT_05236 0.61 -3.7
204,140 + H281DRAFT_05236 0.61 -4.9
204,210 - H281DRAFT_05236 0.67 -2.2
204,392 + H281DRAFT_05236 0.80 -2.9
204,393 - H281DRAFT_05236 0.81 -1.9
204,394 + H281DRAFT_05236 0.81 -1.7
204,467 + H281DRAFT_05236 0.86 -2.4
204,467 + H281DRAFT_05236 0.86 -2.1
204,468 - H281DRAFT_05236 0.86 -2.0
204,468 - H281DRAFT_05236 0.86 -3.9
204,485 - H281DRAFT_05236 0.88 -1.6
204,506 + H281DRAFT_05236 0.89 -2.9
204,551 + -3.1
204,551 + -1.5
204,551 + -0.8
204,557 + -1.9
204,557 + -1.4
204,558 - -4.9
204,644 + -0.5
204,957 + -0.4
204,990 + +3.4
204,990 + -0.9
204,990 + -1.8
204,991 - +1.7
205,016 + -1.5
205,272 + H281DRAFT_05238 0.19 -0.5
205,273 - H281DRAFT_05238 0.19 +0.5
205,296 + H281DRAFT_05238 0.21 -3.0
205,303 - H281DRAFT_05238 0.21 +1.1
205,365 - H281DRAFT_05238 0.27 +0.5
205,536 + H281DRAFT_05238 0.42 +1.3
205,536 + H281DRAFT_05238 0.42 -0.5
205,536 + H281DRAFT_05238 0.42 +0.3
205,537 - H281DRAFT_05238 0.42 +0.4
205,548 + H281DRAFT_05238 0.43 -1.1
205,548 + H281DRAFT_05238 0.43 -1.1

Or see this region's nucleotide sequence