Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04737 and H281DRAFT_04738 are separated by 94 nucleotides H281DRAFT_04738 and H281DRAFT_04739 are separated by 102 nucleotides H281DRAFT_04739 and H281DRAFT_04740 are separated by 322 nucleotides
H281DRAFT_04737: H281DRAFT_04737 - glutaryl-CoA dehydrogenase, at 144,707 to 145,897
_04737
H281DRAFT_04738: H281DRAFT_04738 - transcriptional regulator, IclR family, at 145,992 to 146,777
_04738
H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713
_04739
H281DRAFT_04740: H281DRAFT_04740 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 148,036 to 149,400
_04740
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.902 kb on + strand at 145.902 kb on + strand at 145.902 kb on + strand at 145.903 kb on - strand at 145.984 kb on - strand at 146.164 kb on - strand, within H281DRAFT_04738 at 146.165 kb on + strand, within H281DRAFT_04738 at 146.184 kb on + strand, within H281DRAFT_04738 at 146.317 kb on + strand, within H281DRAFT_04738 at 146.318 kb on - strand, within H281DRAFT_04738 at 146.364 kb on + strand, within H281DRAFT_04738 at 146.365 kb on - strand, within H281DRAFT_04738 at 146.457 kb on + strand, within H281DRAFT_04738 at 146.457 kb on + strand, within H281DRAFT_04738 at 146.458 kb on - strand, within H281DRAFT_04738 at 146.593 kb on - strand, within H281DRAFT_04738 at 146.876 kb on + strand at 146.876 kb on + strand at 146.876 kb on + strand at 146.877 kb on - strand at 146.900 kb on - strand at 146.942 kb on - strand at 146.942 kb on - strand at 147.152 kb on - strand, within H281DRAFT_04739 at 147.161 kb on - strand, within H281DRAFT_04739 at 147.191 kb on + strand, within H281DRAFT_04739 at 147.226 kb on - strand, within H281DRAFT_04739 at 147.287 kb on - strand, within H281DRAFT_04739 at 147.315 kb on + strand, within H281DRAFT_04739 at 147.322 kb on - strand, within H281DRAFT_04739 at 147.327 kb on + strand, within H281DRAFT_04739 at 147.441 kb on - strand, within H281DRAFT_04739 at 147.715 kb on + strand at 147.728 kb on - strand at 147.733 kb on - strand at 147.733 kb on - strand at 147.790 kb on + strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.893 kb on + strand at 147.932 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.065 kb on + strand at 148.186 kb on + strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.460 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.674 kb on - strand, within H281DRAFT_04740
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 145,902 + +1.1 145,902 + +2.6 145,902 + +1.2 145,903 - -2.0 145,984 - -0.1 146,164 - H281DRAFT_04738 0.22 -1.7 146,165 + H281DRAFT_04738 0.22 +0.2 146,184 + H281DRAFT_04738 0.24 -0.5 146,317 + H281DRAFT_04738 0.41 -2.6 146,318 - H281DRAFT_04738 0.41 -0.4 146,364 + H281DRAFT_04738 0.47 -0.6 146,365 - H281DRAFT_04738 0.47 -0.7 146,457 + H281DRAFT_04738 0.59 +0.8 146,457 + H281DRAFT_04738 0.59 +1.2 146,458 - H281DRAFT_04738 0.59 -0.2 146,593 - H281DRAFT_04738 0.76 -1.9 146,876 + -1.1 146,876 + -0.5 146,876 + -0.1 146,877 - -0.1 146,900 - -0.8 146,942 - +0.2 146,942 - +0.2 147,152 - H281DRAFT_04739 0.33 -1.7 147,161 - H281DRAFT_04739 0.34 +0.6 147,191 + H281DRAFT_04739 0.37 +0.3 147,226 - H281DRAFT_04739 0.41 -2.5 147,287 - H281DRAFT_04739 0.49 -0.8 147,315 + H281DRAFT_04739 0.52 -0.1 147,322 - H281DRAFT_04739 0.53 -0.6 147,327 + H281DRAFT_04739 0.54 +1.7 147,441 - H281DRAFT_04739 0.67 -0.7 147,715 + +0.4 147,728 - -0.2 147,733 - +1.9 147,733 - -1.3 147,790 + +1.0 147,791 - +0.7 147,791 - +1.0 147,791 - +0.6 147,893 + -0.7 147,932 + +0.8 148,016 + +0.0 148,016 + +0.7 148,016 + +0.0 148,065 + +0.6 148,186 + H281DRAFT_04740 0.11 -0.6 148,187 - H281DRAFT_04740 0.11 -0.1 148,187 - H281DRAFT_04740 0.11 +0.3 148,187 - H281DRAFT_04740 0.11 +0.9 148,460 + H281DRAFT_04740 0.31 -0.1 148,673 + H281DRAFT_04740 0.47 -0.8 148,673 + H281DRAFT_04740 0.47 +1.1 148,674 - H281DRAFT_04740 0.47 -0.8
Or see this region's nucleotide sequence