Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04016

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04014 and H281DRAFT_04015 are separated by 334 nucleotidesH281DRAFT_04015 and H281DRAFT_04016 are separated by 204 nucleotidesH281DRAFT_04016 and H281DRAFT_04017 are separated by 133 nucleotidesH281DRAFT_04017 and H281DRAFT_04018 are separated by 138 nucleotides H281DRAFT_04014: H281DRAFT_04014 - protein of unknown function (DUF4145), at 116,172 to 116,837 _04014 H281DRAFT_04015: H281DRAFT_04015 - hypothetical protein, at 117,172 to 117,402 _04015 H281DRAFT_04016: H281DRAFT_04016 - MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 117,607 to 118,959 _04016 H281DRAFT_04017: H281DRAFT_04017 - hypothetical protein, at 119,093 to 119,671 _04017 H281DRAFT_04018: H281DRAFT_04018 - glutamate-1-semialdehyde 2,1-aminomutase, at 119,810 to 121,093 _04018 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 116.670 kb on + strand, within H281DRAFT_04014at 116.674 kb on + strand, within H281DRAFT_04014at 116.674 kb on + strand, within H281DRAFT_04014at 116.675 kb on - strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.710 kb on + strand, within H281DRAFT_04014at 116.711 kb on - strand, within H281DRAFT_04014at 116.711 kb on - strand, within H281DRAFT_04014at 116.746 kb on + strand, within H281DRAFT_04014at 116.747 kb on - strand, within H281DRAFT_04014at 116.747 kb on - strand, within H281DRAFT_04014at 116.747 kb on - strandat 116.837 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.850 kb on - strandat 116.851 kb on + strandat 116.851 kb on + strandat 116.851 kb on + strandat 116.860 kb on + strandat 116.861 kb on - strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.905 kb on + strandat 116.906 kb on - strandat 117.038 kb on + strandat 117.055 kb on - strandat 117.278 kb on + strand, within H281DRAFT_04015at 117.297 kb on - strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.312 kb on - strand, within H281DRAFT_04015at 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.522 kb on - strandat 117.645 kb on + strandat 117.668 kb on + strandat 117.668 kb on + strandat 117.668 kb on + strandat 117.669 kb on - strandat 117.669 kb on - strandat 117.705 kb on + strandat 117.706 kb on - strandat 117.706 kb on - strandat 117.706 kb on - strandat 117.951 kb on + strand, within H281DRAFT_04016at 117.951 kb on + strand, within H281DRAFT_04016at 117.951 kb on + strand, within H281DRAFT_04016at 118.070 kb on + strand, within H281DRAFT_04016at 118.071 kb on - strand, within H281DRAFT_04016at 118.095 kb on - strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strandat 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.127 kb on + strand, within H281DRAFT_04016at 118.128 kb on - strand, within H281DRAFT_04016at 118.167 kb on + strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.205 kb on + strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.660 kb on - strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.876 kb on - strandat 118.907 kb on + strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.288 kb on + strand, within H281DRAFT_04017at 119.289 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.363 kb on + strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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116,670 + H281DRAFT_04014 0.75 -0.6
116,674 + H281DRAFT_04014 0.75 -0.2
116,674 + H281DRAFT_04014 0.75 +0.4
116,675 - H281DRAFT_04014 0.76 +0.0
116,708 + H281DRAFT_04014 0.80 +1.2
116,708 + H281DRAFT_04014 0.80 +0.8
116,708 + H281DRAFT_04014 0.80 +0.5
116,708 + H281DRAFT_04014 0.80 +0.3
116,709 - H281DRAFT_04014 0.81 +0.8
116,709 - H281DRAFT_04014 0.81 +0.1
116,709 - H281DRAFT_04014 0.81 +0.6
116,709 - H281DRAFT_04014 0.81 +0.3
116,710 + H281DRAFT_04014 0.81 +0.5
116,711 - H281DRAFT_04014 0.81 -0.2
116,711 - H281DRAFT_04014 0.81 +0.0
116,746 + H281DRAFT_04014 0.86 +0.3
116,747 - H281DRAFT_04014 0.86 +0.8
116,747 - H281DRAFT_04014 0.86 +0.8
116,747 - +1.3
116,837 + -2.3
116,849 + +0.3
116,849 + -0.5
116,849 + +0.5
116,849 + +3.1
116,849 + +0.6
116,850 - -3.5
116,851 + +0.7
116,851 + -0.1
116,851 + -0.3
116,860 + +0.1
116,861 - +1.0
116,871 + +0.1
116,871 + +0.4
116,871 + -0.4
116,871 + -0.2
116,871 + +0.1
116,872 - +0.1
116,872 - -0.2
116,872 - -2.4
116,872 - +0.7
116,905 + +0.1
116,906 - -1.3
117,038 + +0.7
117,055 - +0.1
117,278 + H281DRAFT_04015 0.46 +0.6
117,297 - H281DRAFT_04015 0.54 -0.2
117,311 + H281DRAFT_04015 0.60 +0.4
117,311 + H281DRAFT_04015 0.60 +0.2
117,311 + H281DRAFT_04015 0.60 +0.0
117,312 - H281DRAFT_04015 0.61 -0.5
117,435 + +0.7
117,435 + -0.5
117,435 + +0.8
117,435 + +0.9
117,435 + +1.5
117,435 + +0.3
117,435 + -1.7
117,436 - -0.6
117,436 - +0.1
117,436 - -2.0
117,436 - -0.8
117,436 - -0.6
117,436 - +2.6
117,522 - -0.2
117,645 + +0.7
117,668 + +0.9
117,668 + +0.0
117,668 + -0.3
117,669 - +0.6
117,669 - -3.1
117,705 + +0.2
117,706 - +0.5
117,706 - -0.1
117,706 - -1.0
117,951 + H281DRAFT_04016 0.25 +1.3
117,951 + H281DRAFT_04016 0.25 +0.5
117,951 + H281DRAFT_04016 0.25 -1.0
118,070 + H281DRAFT_04016 0.34 +1.0
118,071 - H281DRAFT_04016 0.34 -0.0
118,095 - H281DRAFT_04016 0.36 -0.2
118,103 + H281DRAFT_04016 0.37 -2.5
118,103 + H281DRAFT_04016 0.37 +0.3
118,103 + H281DRAFT_04016 0.37 +0.6
118,103 + +1.3
118,103 + H281DRAFT_04016 0.37 +0.1
118,103 + H281DRAFT_04016 0.37 +0.4
118,104 - H281DRAFT_04016 0.37 -0.1
118,104 - H281DRAFT_04016 0.37 +0.1
118,127 + H281DRAFT_04016 0.38 +0.3
118,128 - H281DRAFT_04016 0.39 -1.1
118,167 + H281DRAFT_04016 0.41 +1.0
118,168 - H281DRAFT_04016 0.41 +1.9
118,168 - H281DRAFT_04016 0.41 +0.6
118,168 - H281DRAFT_04016 0.41 -0.5
118,168 - H281DRAFT_04016 0.41 +0.7
118,168 - H281DRAFT_04016 0.41 -0.0
118,168 - H281DRAFT_04016 0.41 +1.8
118,168 - H281DRAFT_04016 0.41 -0.9
118,168 - H281DRAFT_04016 0.41 +0.3
118,205 + H281DRAFT_04016 0.44 -1.2
118,206 - H281DRAFT_04016 0.44 +0.5
118,206 - H281DRAFT_04016 0.44 +0.0
118,568 + H281DRAFT_04016 0.71 +0.4
118,568 + H281DRAFT_04016 0.71 -0.5
118,568 + H281DRAFT_04016 0.71 +0.7
118,568 + H281DRAFT_04016 0.71 -0.3
118,569 - H281DRAFT_04016 0.71 -0.4
118,569 - H281DRAFT_04016 0.71 -0.0
118,569 - H281DRAFT_04016 0.71 +0.2
118,569 - H281DRAFT_04016 0.71 -0.5
118,569 - H281DRAFT_04016 0.71 +0.4
118,569 - H281DRAFT_04016 0.71 -0.6
118,607 + H281DRAFT_04016 0.74 +0.6
118,607 + H281DRAFT_04016 0.74 -0.1
118,607 + H281DRAFT_04016 0.74 -0.2
118,608 - H281DRAFT_04016 0.74 +0.9
118,608 - H281DRAFT_04016 0.74 +0.2
118,608 - H281DRAFT_04016 0.74 -0.7
118,660 - H281DRAFT_04016 0.78 -1.4
118,736 + H281DRAFT_04016 0.83 +0.0
118,736 + H281DRAFT_04016 0.83 -0.7
118,736 + H281DRAFT_04016 0.83 +0.8
118,737 - H281DRAFT_04016 0.84 +0.4
118,737 - H281DRAFT_04016 0.84 -1.9
118,737 - H281DRAFT_04016 0.84 -0.9
118,876 - +0.2
118,907 + -2.8
119,072 - +0.4
119,072 - -0.1
119,072 - -0.3
119,288 + H281DRAFT_04017 0.34 +0.6
119,289 - H281DRAFT_04017 0.34 -0.3
119,307 - H281DRAFT_04017 0.37 +1.0
119,307 - H281DRAFT_04017 0.37 +0.6
119,363 + H281DRAFT_04017 0.47 +0.8
119,364 - H281DRAFT_04017 0.47 +0.1
119,364 - H281DRAFT_04017 0.47 +0.7
119,726 - -1.2

Or see this region's nucleotide sequence