Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03867

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03866 and H281DRAFT_03867 are separated by 235 nucleotidesH281DRAFT_03867 and H281DRAFT_03868 are separated by 2 nucleotides H281DRAFT_03866: H281DRAFT_03866 - transcriptional regulator, LysR family, at 394,657 to 395,655 _03866 H281DRAFT_03867: H281DRAFT_03867 - 4-hydroxyphenylpyruvate dioxygenase, at 395,891 to 397,024 _03867 H281DRAFT_03868: H281DRAFT_03868 - transcriptional regulator, XRE family with cupin sensor, at 397,027 to 397,671 _03868 Position (kb) 395 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 395.000 kb on + strand, within H281DRAFT_03866at 395.431 kb on + strand, within H281DRAFT_03866at 395.869 kb on - strandat 395.869 kb on - strandat 395.876 kb on + strandat 396.140 kb on + strand, within H281DRAFT_03867at 396.307 kb on + strand, within H281DRAFT_03867at 396.308 kb on - strand, within H281DRAFT_03867at 396.308 kb on - strand, within H281DRAFT_03867at 396.312 kb on - strand, within H281DRAFT_03867at 397.164 kb on - strand, within H281DRAFT_03868at 397.199 kb on + strand, within H281DRAFT_03868at 397.200 kb on - strand, within H281DRAFT_03868at 397.693 kb on + strandat 397.694 kb on - strandat 397.825 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
395,000 + H281DRAFT_03866 0.34 +0.5
395,431 + H281DRAFT_03866 0.77 +0.3
395,869 - -0.4
395,869 - -0.2
395,876 + -3.1
396,140 + H281DRAFT_03867 0.22 -1.4
396,307 + H281DRAFT_03867 0.37 +2.2
396,308 - H281DRAFT_03867 0.37 -0.6
396,308 - H281DRAFT_03867 0.37 -0.1
396,312 - H281DRAFT_03867 0.37 +0.2
397,164 - H281DRAFT_03868 0.21 -0.8
397,199 + H281DRAFT_03868 0.27 -1.4
397,200 - H281DRAFT_03868 0.27 -0.6
397,693 + -0.6
397,694 - +1.1
397,825 - -0.2

Or see this region's nucleotide sequence