Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03644 and H281DRAFT_03645 are separated by 14 nucleotides H281DRAFT_03645 and H281DRAFT_03646 overlap by 8 nucleotides H281DRAFT_03646 and H281DRAFT_03647 are separated by 25 nucleotides
H281DRAFT_03644: H281DRAFT_03644 - betaine-aldehyde dehydrogenase, at 152,430 to 153,929
_03644
H281DRAFT_03645: H281DRAFT_03645 - Predicted ring-cleavage extradiol dioxygenase, at 153,944 to 154,909
_03645
H281DRAFT_03646: H281DRAFT_03646 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit, at 154,902 to 156,167
_03646
H281DRAFT_03647: H281DRAFT_03647 - Sugar phosphate permease, at 156,193 to 157,596
_03647
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -1
0
1 at 153.975 kb on - strand at 154.449 kb on - strand, within H281DRAFT_03645 at 154.703 kb on + strand at 154.704 kb on - strand, within H281DRAFT_03645 at 154.740 kb on - strand, within H281DRAFT_03645 at 155.131 kb on + strand at 155.131 kb on + strand, within H281DRAFT_03646 at 155.131 kb on + strand, within H281DRAFT_03646 at 155.315 kb on + strand, within H281DRAFT_03646 at 156.544 kb on - strand, within H281DRAFT_03647 at 156.697 kb on + strand, within H281DRAFT_03647 at 156.697 kb on + strand, within H281DRAFT_03647 at 156.782 kb on - strand, within H281DRAFT_03647 at 156.782 kb on - strand, within H281DRAFT_03647 at 157.023 kb on + strand, within H281DRAFT_03647 at 157.024 kb on - strand, within H281DRAFT_03647 at 157.111 kb on + strand, within H281DRAFT_03647
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 153,975 - +0.3 154,449 - H281DRAFT_03645 0.52 -0.3 154,703 + +0.1 154,704 - H281DRAFT_03645 0.79 +0.9 154,740 - H281DRAFT_03645 0.82 +0.2 155,131 + +0.3 155,131 + H281DRAFT_03646 0.18 +0.8 155,131 + H281DRAFT_03646 0.18 +0.2 155,315 + H281DRAFT_03646 0.33 +0.5 156,544 - H281DRAFT_03647 0.25 -0.3 156,697 + H281DRAFT_03647 0.36 -0.8 156,697 + H281DRAFT_03647 0.36 +0.6 156,782 - H281DRAFT_03647 0.42 +0.7 156,782 - H281DRAFT_03647 0.42 +0.1 157,023 + H281DRAFT_03647 0.59 +0.1 157,024 - H281DRAFT_03647 0.59 +0.4 157,111 + H281DRAFT_03647 0.65 +0.2
Or see this region's nucleotide sequence