Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03364 and H281DRAFT_03365 overlap by 4 nucleotides H281DRAFT_03365 and H281DRAFT_03366 overlap by 4 nucleotides H281DRAFT_03366 and H281DRAFT_03367 are separated by 22 nucleotides
H281DRAFT_03364: H281DRAFT_03364 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 424,597 to 425,820
_03364
H281DRAFT_03365: H281DRAFT_03365 - choline dehydrogenase, at 425,817 to 427,457
_03365
H281DRAFT_03366: H281DRAFT_03366 - electron transfer flavoprotein beta subunit, at 427,454 to 428,203
_03366
H281DRAFT_03367: H281DRAFT_03367 - electron transfer flavoprotein alpha subunit apoprotein, at 428,226 to 429,170
_03367
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 425.005 kb on + strand, within H281DRAFT_03364 at 425.162 kb on + strand, within H281DRAFT_03364 at 425.199 kb on + strand, within H281DRAFT_03364 at 425.320 kb on + strand, within H281DRAFT_03364 at 425.320 kb on + strand, within H281DRAFT_03364 at 425.342 kb on - strand, within H281DRAFT_03364 at 425.512 kb on + strand, within H281DRAFT_03364 at 425.567 kb on - strand, within H281DRAFT_03364 at 425.713 kb on - strand at 425.727 kb on + strand at 425.750 kb on - strand at 425.750 kb on - strand at 426.134 kb on + strand, within H281DRAFT_03365 at 426.482 kb on + strand, within H281DRAFT_03365 at 426.482 kb on + strand, within H281DRAFT_03365 at 426.708 kb on + strand, within H281DRAFT_03365 at 426.829 kb on - strand, within H281DRAFT_03365 at 427.138 kb on - strand, within H281DRAFT_03365 at 427.198 kb on - strand, within H281DRAFT_03365 at 427.438 kb on - strand at 428.251 kb on + strand at 428.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 425,005 + H281DRAFT_03364 0.33 +1.1 425,162 + H281DRAFT_03364 0.46 +0.4 425,199 + H281DRAFT_03364 0.49 +1.2 425,320 + H281DRAFT_03364 0.59 +1.6 425,320 + H281DRAFT_03364 0.59 +3.0 425,342 - H281DRAFT_03364 0.61 +0.1 425,512 + H281DRAFT_03364 0.75 -0.2 425,567 - H281DRAFT_03364 0.79 +1.0 425,713 - +0.5 425,727 + +2.7 425,750 - -0.6 425,750 - -0.0 426,134 + H281DRAFT_03365 0.19 +1.9 426,482 + H281DRAFT_03365 0.41 +2.7 426,482 + H281DRAFT_03365 0.41 +2.3 426,708 + H281DRAFT_03365 0.54 +2.1 426,829 - H281DRAFT_03365 0.62 +1.7 427,138 - H281DRAFT_03365 0.80 -2.1 427,198 - H281DRAFT_03365 0.84 -0.1 427,438 - -0.1 428,251 + +0.5 428,294 + +1.5
Or see this region's nucleotide sequence