Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03096

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03095 and H281DRAFT_03096 are separated by 6 nucleotidesH281DRAFT_03096 and H281DRAFT_03097 are separated by 7 nucleotides H281DRAFT_03095: H281DRAFT_03095 - membrane fusion protein, multidrug efflux system, at 127,866 to 128,993 _03095 H281DRAFT_03096: H281DRAFT_03096 - drug resistance transporter, EmrB/QacA subfamily, at 129,000 to 130,571 _03096 H281DRAFT_03097: H281DRAFT_03097 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 130,579 to 132,015 _03097 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -1 0 1at 128.382 kb on - strand, within H281DRAFT_03095at 128.455 kb on + strand, within H281DRAFT_03095at 128.456 kb on - strand, within H281DRAFT_03095at 129.493 kb on + strand, within H281DRAFT_03096at 129.525 kb on + strand, within H281DRAFT_03096at 129.525 kb on + strand, within H281DRAFT_03096at 130.065 kb on + strand, within H281DRAFT_03096at 130.066 kb on - strand, within H281DRAFT_03096at 130.948 kb on + strand, within H281DRAFT_03097at 131.107 kb on + strand, within H281DRAFT_03097at 131.165 kb on + strand, within H281DRAFT_03097

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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128,382 - H281DRAFT_03095 0.46 -0.4
128,455 + H281DRAFT_03095 0.52 -0.4
128,456 - H281DRAFT_03095 0.52 +0.1
129,493 + H281DRAFT_03096 0.31 +1.2
129,525 + H281DRAFT_03096 0.33 +1.2
129,525 + H281DRAFT_03096 0.33 -1.0
130,065 + H281DRAFT_03096 0.68 +0.4
130,066 - H281DRAFT_03096 0.68 +1.1
130,948 + H281DRAFT_03097 0.26 +0.3
131,107 + H281DRAFT_03097 0.37 -0.2
131,165 + H281DRAFT_03097 0.41 +1.1

Or see this region's nucleotide sequence