Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03003

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03001 and H281DRAFT_03002 are separated by 74 nucleotidesH281DRAFT_03002 and H281DRAFT_03003 are separated by 10 nucleotidesH281DRAFT_03003 and H281DRAFT_03004 are separated by 371 nucleotides H281DRAFT_03001: H281DRAFT_03001 - Autotransporter adhesin, at 24,296 to 27,154 _03001 H281DRAFT_03002: H281DRAFT_03002 - hypothetical protein, at 27,229 to 27,357 _03002 H281DRAFT_03003: H281DRAFT_03003 - Cyanate permease, at 27,368 to 28,771 _03003 H281DRAFT_03004: H281DRAFT_03004 - MFS transporter, MHS family, shikimate and dehydroshikimate transport protein, at 29,143 to 30,459 _03004 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 26.514 kb on + strand, within H281DRAFT_03001at 26.654 kb on + strand, within H281DRAFT_03001at 26.654 kb on + strand, within H281DRAFT_03001at 26.675 kb on + strand, within H281DRAFT_03001at 26.676 kb on - strand, within H281DRAFT_03001at 26.676 kb on - strand, within H281DRAFT_03001at 26.820 kb on + strand, within H281DRAFT_03001at 26.845 kb on + strand, within H281DRAFT_03001at 26.846 kb on - strand, within H281DRAFT_03001at 26.846 kb on - strand, within H281DRAFT_03001at 27.026 kb on + strandat 27.027 kb on - strandat 27.027 kb on - strandat 27.106 kb on + strandat 27.107 kb on - strandat 27.266 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.296 kb on + strand, within H281DRAFT_03002at 27.297 kb on - strand, within H281DRAFT_03002at 27.369 kb on + strandat 27.370 kb on - strandat 27.537 kb on + strand, within H281DRAFT_03003at 27.640 kb on - strand, within H281DRAFT_03003at 27.669 kb on + strand, within H281DRAFT_03003at 27.670 kb on - strand, within H281DRAFT_03003at 27.690 kb on + strand, within H281DRAFT_03003at 27.690 kb on + strand, within H281DRAFT_03003at 27.747 kb on + strand, within H281DRAFT_03003at 27.747 kb on + strand, within H281DRAFT_03003at 27.748 kb on - strand, within H281DRAFT_03003at 27.748 kb on - strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.780 kb on + strand, within H281DRAFT_03003at 27.781 kb on - strand, within H281DRAFT_03003at 27.985 kb on - strand, within H281DRAFT_03003at 27.985 kb on - strand, within H281DRAFT_03003at 28.138 kb on - strand, within H281DRAFT_03003at 28.302 kb on - strand, within H281DRAFT_03003at 28.322 kb on + strand, within H281DRAFT_03003at 28.323 kb on - strand, within H281DRAFT_03003at 28.362 kb on + strand, within H281DRAFT_03003at 28.371 kb on + strand, within H281DRAFT_03003at 28.371 kb on + strand, within H281DRAFT_03003at 28.372 kb on - strand, within H281DRAFT_03003at 28.372 kb on - strand, within H281DRAFT_03003at 28.395 kb on + strand, within H281DRAFT_03003at 28.414 kb on + strand, within H281DRAFT_03003at 28.415 kb on - strand, within H281DRAFT_03003at 28.517 kb on + strand, within H281DRAFT_03003at 28.762 kb on + strandat 28.762 kb on + strandat 28.827 kb on + strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.869 kb on - strandat 28.869 kb on - strandat 28.870 kb on + strandat 28.871 kb on - strandat 28.871 kb on - strandat 28.887 kb on + strandat 29.078 kb on + strandat 29.079 kb on - strandat 29.126 kb on + strandat 29.179 kb on + strandat 29.179 kb on + strandat 29.211 kb on - strandat 29.334 kb on - strand, within H281DRAFT_03004at 29.377 kb on + strand, within H281DRAFT_03004at 29.432 kb on - strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.504 kb on + strand, within H281DRAFT_03004at 29.505 kb on - strand, within H281DRAFT_03004at 29.633 kb on + strand, within H281DRAFT_03004at 29.633 kb on + strand, within H281DRAFT_03004at 29.634 kb on - strand, within H281DRAFT_03004at 29.660 kb on + strand, within H281DRAFT_03004at 29.660 kb on + strand, within H281DRAFT_03004at 29.661 kb on - strand, within H281DRAFT_03004at 29.661 kb on - strand, within H281DRAFT_03004

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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26,514 + H281DRAFT_03001 0.78 -1.3
26,654 + H281DRAFT_03001 0.82 -0.1
26,654 + H281DRAFT_03001 0.82 -1.1
26,675 + H281DRAFT_03001 0.83 +0.1
26,676 - H281DRAFT_03001 0.83 -0.2
26,676 - H281DRAFT_03001 0.83 -1.8
26,820 + H281DRAFT_03001 0.88 +0.5
26,845 + H281DRAFT_03001 0.89 +1.1
26,846 - H281DRAFT_03001 0.89 +2.9
26,846 - H281DRAFT_03001 0.89 +0.4
27,026 + -0.4
27,027 - -0.0
27,027 - -1.2
27,106 + +0.8
27,107 - -0.2
27,266 + H281DRAFT_03002 0.29 -0.4
27,296 + H281DRAFT_03002 0.52 +0.5
27,296 + H281DRAFT_03002 0.52 +0.5
27,296 + H281DRAFT_03002 0.52 -0.9
27,297 - H281DRAFT_03002 0.53 -0.2
27,369 + +0.5
27,370 - +0.0
27,537 + H281DRAFT_03003 0.12 -2.7
27,640 - H281DRAFT_03003 0.19 -0.9
27,669 + H281DRAFT_03003 0.21 -1.9
27,670 - H281DRAFT_03003 0.22 +1.3
27,690 + H281DRAFT_03003 0.23 +0.0
27,690 + H281DRAFT_03003 0.23 -1.1
27,747 + H281DRAFT_03003 0.27 +0.0
27,747 + H281DRAFT_03003 0.27 +0.1
27,748 - H281DRAFT_03003 0.27 -0.7
27,748 - H281DRAFT_03003 0.27 -0.6
27,780 + H281DRAFT_03003 0.29 +0.7
27,780 + H281DRAFT_03003 0.29 +0.6
27,780 + H281DRAFT_03003 0.29 -0.4
27,781 - H281DRAFT_03003 0.29 -0.3
27,985 - H281DRAFT_03003 0.44 +1.0
27,985 - H281DRAFT_03003 0.44 +0.0
28,138 - H281DRAFT_03003 0.55 +0.3
28,302 - H281DRAFT_03003 0.67 -0.0
28,322 + H281DRAFT_03003 0.68 +0.5
28,323 - H281DRAFT_03003 0.68 +0.1
28,362 + H281DRAFT_03003 0.71 -0.1
28,371 + H281DRAFT_03003 0.71 -1.6
28,371 + H281DRAFT_03003 0.71 -0.1
28,372 - H281DRAFT_03003 0.72 -0.4
28,372 - H281DRAFT_03003 0.72 +0.1
28,395 + H281DRAFT_03003 0.73 +1.2
28,414 + H281DRAFT_03003 0.75 -0.5
28,415 - H281DRAFT_03003 0.75 -0.9
28,517 + H281DRAFT_03003 0.82 -0.0
28,762 + +0.8
28,762 + -0.1
28,827 + -0.6
28,828 - +0.0
28,828 - +0.1
28,869 - -0.7
28,869 - +0.3
28,870 + -1.2
28,871 - -0.2
28,871 - +0.7
28,887 + -3.7
29,078 + -0.3
29,079 - +0.5
29,126 + -0.4
29,179 + -1.2
29,179 + -0.5
29,211 - +1.3
29,334 - H281DRAFT_03004 0.15 -0.1
29,377 + H281DRAFT_03004 0.18 +0.4
29,432 - H281DRAFT_03004 0.22 +0.6
29,502 + H281DRAFT_03004 0.27 +0.1
29,502 + H281DRAFT_03004 0.27 +0.1
29,502 + H281DRAFT_03004 0.27 +0.6
29,503 - H281DRAFT_03004 0.27 -1.0
29,503 - H281DRAFT_03004 0.27 -1.0
29,503 - H281DRAFT_03004 0.27 +1.4
29,504 + H281DRAFT_03004 0.27 +0.0
29,505 - H281DRAFT_03004 0.27 -1.6
29,633 + H281DRAFT_03004 0.37 -2.2
29,633 + H281DRAFT_03004 0.37 +0.0
29,634 - H281DRAFT_03004 0.37 -1.8
29,660 + H281DRAFT_03004 0.39 -0.8
29,660 + H281DRAFT_03004 0.39 +1.0
29,661 - H281DRAFT_03004 0.39 -1.4
29,661 - H281DRAFT_03004 0.39 +0.6

Or see this region's nucleotide sequence