Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02937

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02936 and H281DRAFT_02937 are separated by 71 nucleotidesH281DRAFT_02937 and H281DRAFT_02938 are separated by 203 nucleotides H281DRAFT_02936: H281DRAFT_02936 - nitrilase, at 548,785 to 549,723 _02936 H281DRAFT_02937: H281DRAFT_02937 - Lipocalin-like domain-containing protein, at 549,795 to 550,307 _02937 H281DRAFT_02938: H281DRAFT_02938 - Fucose 4-O-acetylase, at 550,511 to 551,602 _02938 Position (kb) 549 550 551Strain fitness (log2 ratio) -1 0 1at 548.846 kb on - strandat 548.862 kb on - strandat 548.930 kb on - strand, within H281DRAFT_02936at 549.168 kb on - strand, within H281DRAFT_02936at 549.205 kb on + strand, within H281DRAFT_02936at 549.216 kb on - strand, within H281DRAFT_02936at 549.216 kb on - strand, within H281DRAFT_02936at 549.777 kb on - strandat 549.982 kb on + strand, within H281DRAFT_02937at 550.099 kb on + strandat 550.331 kb on - strandat 550.539 kb on - strandat 550.682 kb on + strand, within H281DRAFT_02938at 550.683 kb on - strand, within H281DRAFT_02938at 550.800 kb on + strand, within H281DRAFT_02938at 550.881 kb on - strand, within H281DRAFT_02938at 550.891 kb on + strand, within H281DRAFT_02938at 551.097 kb on - strand, within H281DRAFT_02938at 551.097 kb on - strand, within H281DRAFT_02938at 551.193 kb on - strand, within H281DRAFT_02938at 551.193 kb on - strand, within H281DRAFT_02938at 551.226 kb on + strand, within H281DRAFT_02938

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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548,846 - -0.2
548,862 - +1.0
548,930 - H281DRAFT_02936 0.15 +1.1
549,168 - H281DRAFT_02936 0.41 +0.4
549,205 + H281DRAFT_02936 0.45 -0.3
549,216 - H281DRAFT_02936 0.46 -0.7
549,216 - H281DRAFT_02936 0.46 -1.6
549,777 - -0.9
549,982 + H281DRAFT_02937 0.36 +0.8
550,099 + -1.2
550,331 - -0.7
550,539 - +1.3
550,682 + H281DRAFT_02938 0.16 +0.4
550,683 - H281DRAFT_02938 0.16 +0.4
550,800 + H281DRAFT_02938 0.26 +0.4
550,881 - H281DRAFT_02938 0.34 -1.0
550,891 + H281DRAFT_02938 0.35 -0.6
551,097 - H281DRAFT_02938 0.54 +0.4
551,097 - H281DRAFT_02938 0.54 +0.7
551,193 - H281DRAFT_02938 0.62 +0.6
551,193 - H281DRAFT_02938 0.62 +0.0
551,226 + H281DRAFT_02938 0.65 -1.0

Or see this region's nucleotide sequence