Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02593 and H281DRAFT_02594 are separated by 24 nucleotides H281DRAFT_02594 and H281DRAFT_02595 are separated by 159 nucleotides H281DRAFT_02595 and H281DRAFT_02596 are separated by 107 nucleotides
H281DRAFT_02593: H281DRAFT_02593 - aerobic C4-dicarboxylate transport protein, at 166,273 to 167,661
_02593
H281DRAFT_02594: H281DRAFT_02594 - 3-carboxy-cis,cis-muconate cycloisomerase, at 167,686 to 169,056
_02594
H281DRAFT_02595: H281DRAFT_02595 - transcriptional regulator, GntR family, at 169,216 to 169,947
_02595
H281DRAFT_02596: H281DRAFT_02596 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 170,055 to 171,596
_02596
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 167.179 kb on + strand, within H281DRAFT_02593 at 167.180 kb on - strand, within H281DRAFT_02593 at 167.180 kb on - strand, within H281DRAFT_02593 at 167.557 kb on - strand at 167.557 kb on - strand at 167.601 kb on - strand at 167.666 kb on + strand at 167.666 kb on + strand at 167.666 kb on + strand at 167.745 kb on - strand at 168.617 kb on - strand, within H281DRAFT_02594 at 168.938 kb on + strand at 168.938 kb on + strand at 168.939 kb on - strand at 169.160 kb on + strand at 169.166 kb on + strand at 169.167 kb on - strand at 169.232 kb on - strand at 169.295 kb on - strand, within H281DRAFT_02595 at 169.295 kb on - strand, within H281DRAFT_02595 at 169.649 kb on - strand, within H281DRAFT_02595 at 169.663 kb on + strand, within H281DRAFT_02595 at 169.850 kb on - strand, within H281DRAFT_02595 at 169.850 kb on - strand, within H281DRAFT_02595 at 170.013 kb on + strand at 170.050 kb on + strand at 170.050 kb on + strand at 170.050 kb on + strand at 170.051 kb on - strand at 170.051 kb on - strand at 170.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 167,179 + H281DRAFT_02593 0.65 +0.0 167,180 - H281DRAFT_02593 0.65 -0.2 167,180 - H281DRAFT_02593 0.65 +0.2 167,557 - -1.1 167,557 - +0.8 167,601 - +0.2 167,666 + -0.8 167,666 + +0.5 167,666 + +0.2 167,745 - +0.2 168,617 - H281DRAFT_02594 0.68 -1.5 168,938 + -0.5 168,938 + -1.4 168,939 - +0.4 169,160 + -1.2 169,166 + +0.4 169,167 - -0.0 169,232 - -0.4 169,295 - H281DRAFT_02595 0.11 -3.1 169,295 - H281DRAFT_02595 0.11 -0.4 169,649 - H281DRAFT_02595 0.59 -1.1 169,663 + H281DRAFT_02595 0.61 -1.0 169,850 - H281DRAFT_02595 0.87 +0.1 169,850 - H281DRAFT_02595 0.87 +0.4 170,013 + +1.1 170,050 + -0.2 170,050 + -1.3 170,050 + -0.9 170,051 - -0.3 170,051 - -0.1 170,051 - +0.4
Or see this region's nucleotide sequence