Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02527 and H281DRAFT_02528 are separated by 21 nucleotides H281DRAFT_02528 and H281DRAFT_02529 overlap by 4 nucleotides H281DRAFT_02529 and H281DRAFT_02530 are separated by 50 nucleotides H281DRAFT_02530 and H281DRAFT_02531 are separated by 56 nucleotides
H281DRAFT_02527: H281DRAFT_02527 - hypothetical protein, at 103,687 to 104,355
_02527
H281DRAFT_02528: H281DRAFT_02528 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 104,377 to 105,213
_02528
H281DRAFT_02529: H281DRAFT_02529 - shikimate dehydrogenase, at 105,210 to 106,022
_02529
H281DRAFT_02530: H281DRAFT_02530 - transcriptional regulator, IclR family, at 106,073 to 106,864
_02530
H281DRAFT_02531: H281DRAFT_02531 - Acyl dehydratase, at 106,921 to 107,406
_02531
Position (kb) 105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 104.321 kb on - strand at 104.332 kb on + strand at 104.333 kb on - strand at 104.610 kb on + strand, within H281DRAFT_02528 at 104.610 kb on + strand, within H281DRAFT_02528 at 104.614 kb on + strand, within H281DRAFT_02528 at 104.615 kb on - strand, within H281DRAFT_02528 at 104.615 kb on - strand, within H281DRAFT_02528 at 104.673 kb on + strand, within H281DRAFT_02528 at 104.785 kb on + strand, within H281DRAFT_02528 at 104.785 kb on + strand, within H281DRAFT_02528 at 104.786 kb on - strand, within H281DRAFT_02528 at 104.812 kb on + strand, within H281DRAFT_02528 at 104.812 kb on + strand, within H281DRAFT_02528 at 104.813 kb on - strand, within H281DRAFT_02528 at 104.926 kb on + strand, within H281DRAFT_02528 at 105.209 kb on + strand at 105.301 kb on + strand, within H281DRAFT_02529 at 105.344 kb on - strand, within H281DRAFT_02529 at 105.347 kb on - strand, within H281DRAFT_02529 at 105.739 kb on + strand, within H281DRAFT_02529 at 105.880 kb on + strand, within H281DRAFT_02529 at 105.881 kb on - strand, within H281DRAFT_02529 at 106.063 kb on + strand at 106.072 kb on + strand at 106.073 kb on - strand at 106.220 kb on + strand, within H281DRAFT_02530 at 106.251 kb on - strand, within H281DRAFT_02530 at 106.428 kb on + strand, within H281DRAFT_02530 at 106.429 kb on - strand, within H281DRAFT_02530 at 107.005 kb on + strand, within H281DRAFT_02531
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 104,321 - -0.8 104,332 + +0.2 104,333 - +1.2 104,610 + H281DRAFT_02528 0.28 -0.3 104,610 + H281DRAFT_02528 0.28 +0.6 104,614 + H281DRAFT_02528 0.28 -0.3 104,615 - H281DRAFT_02528 0.28 -0.3 104,615 - H281DRAFT_02528 0.28 -0.2 104,673 + H281DRAFT_02528 0.35 -0.2 104,785 + H281DRAFT_02528 0.49 -1.3 104,785 + H281DRAFT_02528 0.49 +0.3 104,786 - H281DRAFT_02528 0.49 -0.2 104,812 + H281DRAFT_02528 0.52 -1.3 104,812 + H281DRAFT_02528 0.52 +0.8 104,813 - H281DRAFT_02528 0.52 +0.2 104,926 + H281DRAFT_02528 0.66 +0.1 105,209 + +1.0 105,301 + H281DRAFT_02529 0.11 +4.5 105,344 - H281DRAFT_02529 0.16 +0.2 105,347 - H281DRAFT_02529 0.17 +1.1 105,739 + H281DRAFT_02529 0.65 +0.5 105,880 + H281DRAFT_02529 0.82 -1.2 105,881 - H281DRAFT_02529 0.83 +0.5 106,063 + -2.0 106,072 + +0.8 106,073 - -0.1 106,220 + H281DRAFT_02530 0.19 +0.3 106,251 - H281DRAFT_02530 0.22 +0.1 106,428 + H281DRAFT_02530 0.45 +1.2 106,429 - H281DRAFT_02530 0.45 +0.9 107,005 + H281DRAFT_02531 0.17 -0.1
Or see this region's nucleotide sequence