Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02338

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02337 and H281DRAFT_02338 overlap by 4 nucleotidesH281DRAFT_02338 and H281DRAFT_02339 are separated by 302 nucleotides H281DRAFT_02337: H281DRAFT_02337 - AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase, at 494,387 to 495,562 _02337 H281DRAFT_02338: H281DRAFT_02338 - DNA-3-methyladenine glycosylase II, at 495,559 to 496,476 _02338 H281DRAFT_02339: H281DRAFT_02339 - glutamate-cysteine ligase, at 496,779 to 498,425 _02339 Position (kb) 495 496 497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 494.814 kb on - strand, within H281DRAFT_02337at 494.814 kb on - strand, within H281DRAFT_02337at 494.918 kb on + strand, within H281DRAFT_02337at 494.918 kb on + strand, within H281DRAFT_02337at 494.918 kb on + strand, within H281DRAFT_02337at 494.961 kb on - strand, within H281DRAFT_02337at 494.961 kb on - strand, within H281DRAFT_02337at 495.291 kb on - strand, within H281DRAFT_02337at 495.599 kb on - strandat 495.685 kb on + strand, within H281DRAFT_02338at 495.953 kb on + strand, within H281DRAFT_02338at 495.954 kb on - strand, within H281DRAFT_02338at 495.954 kb on - strand, within H281DRAFT_02338at 496.181 kb on + strand, within H281DRAFT_02338at 496.182 kb on - strand, within H281DRAFT_02338at 496.229 kb on + strand, within H281DRAFT_02338at 496.229 kb on + strand, within H281DRAFT_02338at 496.267 kb on + strand, within H281DRAFT_02338at 496.268 kb on - strand, within H281DRAFT_02338at 496.415 kb on - strandat 496.595 kb on + strandat 496.704 kb on + strandat 496.704 kb on + strandat 496.705 kb on - strandat 496.915 kb on + strandat 497.109 kb on + strand, within H281DRAFT_02339at 497.109 kb on + strand, within H281DRAFT_02339at 497.110 kb on - strand, within H281DRAFT_02339at 497.110 kb on - strand, within H281DRAFT_02339at 497.196 kb on + strand, within H281DRAFT_02339at 497.196 kb on + strand, within H281DRAFT_02339at 497.197 kb on - strand, within H281DRAFT_02339at 497.197 kb on - strand, within H281DRAFT_02339at 497.226 kb on + strand, within H281DRAFT_02339at 497.226 kb on + strand, within H281DRAFT_02339at 497.226 kb on + strand, within H281DRAFT_02339at 497.227 kb on - strand, within H281DRAFT_02339at 497.227 kb on - strand, within H281DRAFT_02339at 497.227 kb on - strand, within H281DRAFT_02339at 497.227 kb on - strand, within H281DRAFT_02339at 497.227 kb on - strand, within H281DRAFT_02339at 497.233 kb on - strand, within H281DRAFT_02339at 497.293 kb on - strand, within H281DRAFT_02339at 497.293 kb on - strand, within H281DRAFT_02339at 497.298 kb on + strand, within H281DRAFT_02339at 497.299 kb on - strand, within H281DRAFT_02339at 497.299 kb on - strandat 497.382 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.430 kb on + strand, within H281DRAFT_02339at 497.431 kb on - strand, within H281DRAFT_02339at 497.431 kb on - strand, within H281DRAFT_02339at 497.431 kb on - strand, within H281DRAFT_02339

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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494,814 - H281DRAFT_02337 0.36 +1.0
494,814 - H281DRAFT_02337 0.36 -1.0
494,918 + H281DRAFT_02337 0.45 -0.3
494,918 + H281DRAFT_02337 0.45 -0.3
494,918 + H281DRAFT_02337 0.45 -0.4
494,961 - H281DRAFT_02337 0.49 +0.6
494,961 - H281DRAFT_02337 0.49 +0.5
495,291 - H281DRAFT_02337 0.77 +0.2
495,599 - +0.2
495,685 + H281DRAFT_02338 0.14 -0.7
495,953 + H281DRAFT_02338 0.43 -0.2
495,954 - H281DRAFT_02338 0.43 +1.1
495,954 - H281DRAFT_02338 0.43 -1.9
496,181 + H281DRAFT_02338 0.68 -0.8
496,182 - H281DRAFT_02338 0.68 -0.9
496,229 + H281DRAFT_02338 0.73 -0.4
496,229 + H281DRAFT_02338 0.73 +0.5
496,267 + H281DRAFT_02338 0.77 +0.9
496,268 - H281DRAFT_02338 0.77 +0.4
496,415 - -0.4
496,595 + -0.0
496,704 + +0.4
496,704 + -0.3
496,705 - +0.2
496,915 + -3.2
497,109 + H281DRAFT_02339 0.20 -0.9
497,109 + H281DRAFT_02339 0.20 -0.0
497,110 - H281DRAFT_02339 0.20 +0.0
497,110 - H281DRAFT_02339 0.20 -2.5
497,196 + H281DRAFT_02339 0.25 -0.9
497,196 + H281DRAFT_02339 0.25 -0.5
497,197 - H281DRAFT_02339 0.25 -1.1
497,197 - H281DRAFT_02339 0.25 -1.1
497,226 + H281DRAFT_02339 0.27 -3.6
497,226 + H281DRAFT_02339 0.27 -0.7
497,226 + H281DRAFT_02339 0.27 -4.2
497,227 - H281DRAFT_02339 0.27 -1.2
497,227 - H281DRAFT_02339 0.27 -3.8
497,227 - H281DRAFT_02339 0.27 -2.6
497,227 - H281DRAFT_02339 0.27 -1.5
497,227 - H281DRAFT_02339 0.27 -2.3
497,233 - H281DRAFT_02339 0.28 -3.1
497,293 - H281DRAFT_02339 0.31 -2.3
497,293 - H281DRAFT_02339 0.31 -3.6
497,298 + H281DRAFT_02339 0.32 -1.7
497,299 - H281DRAFT_02339 0.32 -4.0
497,299 - -0.4
497,382 + H281DRAFT_02339 0.37 -0.8
497,430 + H281DRAFT_02339 0.40 -2.2
497,430 + H281DRAFT_02339 0.40 -1.4
497,430 + H281DRAFT_02339 0.40 -1.2
497,430 + H281DRAFT_02339 0.40 -1.6
497,430 + H281DRAFT_02339 0.40 +0.4
497,430 + H281DRAFT_02339 0.40 -0.3
497,431 - H281DRAFT_02339 0.40 -0.3
497,431 - H281DRAFT_02339 0.40 -0.8
497,431 - H281DRAFT_02339 0.40 -0.3

Or see this region's nucleotide sequence