Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02190

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02188 and H281DRAFT_02189 are separated by 3 nucleotidesH281DRAFT_02189 and H281DRAFT_02190 are separated by 51 nucleotidesH281DRAFT_02190 and H281DRAFT_02191 are separated by 98 nucleotidesH281DRAFT_02191 and H281DRAFT_02192 are separated by 130 nucleotides H281DRAFT_02188: H281DRAFT_02188 - hypothetical protein, at 331,053 to 331,793 _02188 H281DRAFT_02189: H281DRAFT_02189 - hypothetical protein, at 331,797 to 331,991 _02189 H281DRAFT_02190: H281DRAFT_02190 - Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist, at 332,043 to 333,068 _02190 H281DRAFT_02191: H281DRAFT_02191 - hypothetical protein, at 333,167 to 333,694 _02191 H281DRAFT_02192: H281DRAFT_02192 - MFS transporter, YNFM family, putative membrane transport protein, at 333,825 to 335,030 _02192 Position (kb) 332 333 334Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 331.054 kb on + strandat 331.054 kb on + strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.646 kb on + strand, within H281DRAFT_02188at 331.646 kb on + strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.769 kb on + strandat 331.770 kb on - strandat 331.817 kb on + strand, within H281DRAFT_02189at 332.116 kb on + strandat 332.117 kb on - strandat 332.266 kb on + strandat 332.570 kb on - strand, within H281DRAFT_02190at 332.608 kb on + strand, within H281DRAFT_02190at 332.609 kb on - strand, within H281DRAFT_02190at 332.609 kb on - strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.670 kb on - strand, within H281DRAFT_02190at 332.670 kb on - strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.761 kb on + strand, within H281DRAFT_02190at 332.762 kb on - strand, within H281DRAFT_02190at 332.860 kb on + strand, within H281DRAFT_02190at 332.860 kb on + strand, within H281DRAFT_02190at 332.861 kb on - strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.921 kb on - strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.951 kb on + strand, within H281DRAFT_02190at 332.955 kb on + strand, within H281DRAFT_02190at 332.956 kb on - strand, within H281DRAFT_02190at 333.276 kb on + strand, within H281DRAFT_02191at 333.277 kb on - strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.411 kb on - strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.438 kb on + strand, within H281DRAFT_02191at 333.438 kb on + strand, within H281DRAFT_02191at 333.439 kb on - strand, within H281DRAFT_02191at 333.459 kb on - strand, within H281DRAFT_02191at 333.494 kb on + strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.618 kb on + strand, within H281DRAFT_02191at 333.618 kb on + strand, within H281DRAFT_02191at 333.619 kb on - strand, within H281DRAFT_02191at 333.619 kb on - strand, within H281DRAFT_02191at 333.638 kb on + strand, within H281DRAFT_02191at 333.709 kb on + strandat 333.710 kb on - strandat 333.710 kb on - strandat 333.767 kb on + strandat 333.768 kb on - strandat 333.768 kb on - strandat 333.849 kb on + strandat 333.850 kb on - strandat 333.930 kb on + strandat 333.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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331,054 + +0.2
331,054 + -0.5
331,055 - -0.1
331,055 - +0.3
331,055 - +0.6
331,646 + H281DRAFT_02188 0.80 +0.6
331,646 + H281DRAFT_02188 0.80 +0.9
331,647 - H281DRAFT_02188 0.80 -0.3
331,647 - H281DRAFT_02188 0.80 -0.1
331,769 + -0.8
331,770 - -0.1
331,817 + H281DRAFT_02189 0.10 -0.3
332,116 + -0.7
332,117 - -0.3
332,266 + -0.5
332,570 - H281DRAFT_02190 0.51 +1.4
332,608 + H281DRAFT_02190 0.55 +1.5
332,609 - H281DRAFT_02190 0.55 +0.4
332,609 - H281DRAFT_02190 0.55 +0.8
332,669 + H281DRAFT_02190 0.61 -2.4
332,669 + H281DRAFT_02190 0.61 +0.2
332,669 + H281DRAFT_02190 0.61 -0.9
332,669 + H281DRAFT_02190 0.61 -1.1
332,670 - H281DRAFT_02190 0.61 +0.0
332,670 - H281DRAFT_02190 0.61 -0.8
332,741 + H281DRAFT_02190 0.68 -0.0
332,741 + H281DRAFT_02190 0.68 -0.4
332,741 + H281DRAFT_02190 0.68 +0.2
332,742 - H281DRAFT_02190 0.68 +0.6
332,742 - H281DRAFT_02190 0.68 -0.4
332,742 - H281DRAFT_02190 0.68 +0.5
332,761 + H281DRAFT_02190 0.70 +1.0
332,762 - H281DRAFT_02190 0.70 -0.4
332,860 + H281DRAFT_02190 0.80 -0.1
332,860 + H281DRAFT_02190 0.80 +0.1
332,861 - H281DRAFT_02190 0.80 +0.9
332,905 + H281DRAFT_02190 0.84 +1.0
332,905 + H281DRAFT_02190 0.84 -1.9
332,920 + H281DRAFT_02190 0.85 -0.1
332,920 + H281DRAFT_02190 0.85 +0.3
332,921 - H281DRAFT_02190 0.86 -0.4
332,939 + H281DRAFT_02190 0.87 +0.7
332,939 + H281DRAFT_02190 0.87 +0.4
332,940 - H281DRAFT_02190 0.87 -1.1
332,940 - H281DRAFT_02190 0.87 -2.1
332,940 - H281DRAFT_02190 0.87 -0.3
332,940 - H281DRAFT_02190 0.87 -0.4
332,951 + H281DRAFT_02190 0.88 +0.4
332,955 + H281DRAFT_02190 0.89 -1.9
332,956 - H281DRAFT_02190 0.89 -0.1
333,276 + H281DRAFT_02191 0.21 -0.7
333,277 - H281DRAFT_02191 0.21 +0.6
333,410 + H281DRAFT_02191 0.46 -1.2
333,410 + H281DRAFT_02191 0.46 -0.2
333,410 + H281DRAFT_02191 0.46 -0.7
333,411 - H281DRAFT_02191 0.46 -0.5
333,412 + H281DRAFT_02191 0.46 +0.0
333,412 + H281DRAFT_02191 0.46 -0.4
333,412 + H281DRAFT_02191 0.46 -0.2
333,412 + H281DRAFT_02191 0.46 -0.4
333,412 + H281DRAFT_02191 0.46 -0.6
333,438 + H281DRAFT_02191 0.51 -1.8
333,438 + H281DRAFT_02191 0.51 -0.1
333,439 - H281DRAFT_02191 0.52 +0.4
333,459 - H281DRAFT_02191 0.55 -3.9
333,494 + H281DRAFT_02191 0.62 -2.5
333,495 - H281DRAFT_02191 0.62 -0.9
333,495 - H281DRAFT_02191 0.62 -0.3
333,495 - H281DRAFT_02191 0.62 -0.4
333,618 + H281DRAFT_02191 0.85 +0.0
333,618 + H281DRAFT_02191 0.85 -0.9
333,619 - H281DRAFT_02191 0.86 +1.4
333,619 - H281DRAFT_02191 0.86 +0.6
333,638 + H281DRAFT_02191 0.89 -2.0
333,709 + +0.4
333,710 - -0.8
333,710 - -1.0
333,767 + -0.1
333,768 - -0.6
333,768 - -2.0
333,849 + +0.5
333,850 - -0.2
333,930 + -2.8
333,931 - -0.2

Or see this region's nucleotide sequence